YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90304521, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPQPSPQQ LAAMQQQMAA EAAKRGMTPE EFANMQRQQL TQEAAKRGMT PEQYINHLRA  60
   61 QAMHQHQMQK QQQSGENHDH DHDHDHNHNH NHSHDHEHGQ DDHQHEGCCD HNHGHQHQRQ 120
  121 IPVKSGVPAD PKALAVANFL RSQNLKTRTC ILDGRRRELF KVKRAIRALE SPAYTKAASK 180
  181 PNSLLPPVTD RASAENTFKL LPMSLLALRV SKIEQPNRPK QKRVKGQWNV RIEQHQDTDP 240
  241 MMHYAWLYEG PQWKQKAMAA GVLIAIMAVV MFPLWPMMLR QGVWYLSIAM MGLLGLFFAM 300
  301 SIFRLILFCV TFFVVPPGLW LYPNLFEDVG FFDSFRPVWG WQETKKKKKK AKKMTDNTIT 360
  361 PPERPSQPKS STATSTGAQP QANTGEATKR GLTASVEDAD EE

Type	Start	End	Confidence
Cytoplasmic	1	256	0.70
Transmembrane Helix	257	277	0.92
Non-Cytoplasmic	278	282	0.56
Transmembrane Helix	283	315	0.74
Cytoplasmic	316	402	0.58