YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|90301273, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVAVETPAP ISRQPESFDP MPIEAPEQAP LSQNVVVPPS DQPSEDPSMP TESGAPDRPA  60
   61 ESDAPADENP IDQTPSNPEQ STNSVNEETS IDTFVDPAAN SIVPQATTAE PEDSGDPADS 120
  121 ASGGDTSSDG STRPTSEDSA ESNGSTSEED SPEDNEDKTE EEPAYWADIV EDTSVPDEAE 180
  181 LKEIESAGAD CSTYEYDYWE KTFYRSLDDP EYRASEKARL TWKIKGVRGT KEKPNRATIM 240
  241 RSPAAYVGGY YWTIKFFPRG NSVSSLSIYV ECSATPPEPD KEIPQTEFKV LKGAPDADLS 300
  301 KLAPAVELSL PATVETKKPR SKQASSKDEA QTGETEVENN ENSGRSTPAE TKEEEKKDWR 360
  361 VSAQIGVILY NPNEPRTGWM QSSSHQFNPH NVDWGWTHFH GPWDQIHKRH HGQRQALLRD 420
  421 DTLAFDAYIQ IFDDPTQSLW WHASDSEPVW DSFSLTGYRP WGDPMVNHRH EVAGLVTWLM 480
  481 MASFRDVIQS VDILEHLTNP NVKPRPLCDA LQRLLWSLRP QSGLSTSFID TDQVTTTLRN 540
  541 LHEFSGDVTD FWERLRRTLE LELAGTDAID KLAKIFDSPR IENTADGVGD SVSVNHIPRE 600
  601 ANGGIRVSAA KANSIQQAAK NYLDGKPGKW SLPSVFHVEL VRQTFDKSTR QWNMLYDRVK 660
  661 LDETLDLSEC LVDGQVGKYS LYGLVVHKGS RSSGRFYSIL RPGGPNTRWL AFEDASDNKI 720
  721 ECLTKKAALE AHEGVDASNL KKIDKSGADV AVVVVYIRDD MISQYLTGKL EPWQVGELHQ 780
  781 HYFMNGYYHL NRELKNGLPP TVKVELFSLS DFSIIEKSIV DSYDLMAVAR ATGQYNTLSV 840
  841 PGNTTFMELR KKIASLKSTE IHERIRIWQL GARKPLFAPT LNFQIIYDLT DVVMSFELSV 900
  901 LRLWVYVLSD EEARFFAVRD QVSDSQPCDE LPPEEPVPSN EEPENSQENT ARSQDAAVPN 960
  961 GTDDAEMNDA PAENREEAAT VTPDQAPHPP AEQEPQSTSD QPMPNETVSA NDGEGGTSDD1020
 1021 TPMQDAIVPA GQENVNNDTA MDDDADIAAV IAQDLAEYER AEAMETEPSP APESTQQTNV1080
 1081 NDTQQQPLST QTEEPPNVSS EEAPEETAPQ TDTTQETSQP PPANDDDVTM EDGPPVNSSE1140
 1141 RQQDTTEAEE NNTDQATVDS NSTLPTSELV PPRSHVYYFI QRFDAEKQEL NTVGTFFATK1200
 1201 SETIKESIRT ALGFEKNKQF LLWHRVDGIS IVAISSVEIF DDIVGYTDGE CFIVGDVIGK1260
 1261 NERMKLAEAG LFSSPDRLVR YLWAVGRNHP TKSFTGTKTT EATYNGDYYS GEFKNGYYHG1320
 1321 KGTHISESGA TYTGDFVLGE RQGTGTMEYA TGDTYTGDWV EDQRHGQGTF VERKTGNKYV1380
 1381 GGYRNGKRHG KGISYWEVAD EEMDLCQICY SENQDSLFYS CGHVNLSSRS HFCFHDEMTR1440
 1441 FYLDPIPLTF GGDGDIGIFP DFRDRRPGLP FPPLLPDPET LPEPDSYPDK QTTTNDLAEE1500
 1501 EEEVEEEDDD DGIAFGEDAD FRSHYTSPPS LDELDEDSGS LNDEEEDEEE DGEADDDDGI1560
 1561 AIHKPFLQST GSLPNAFAPP FYNRPPTPLP PSPSLTSLLR PSFSANTSRP TTPDSSDVET1620
 1621 PNDTEAAVAK SARIATTVPR ASPKVPTYEY YGFVLYLTSS LAFLMYLLWS FLPSPFLHQL1680
 1681 GIYYYPNRWW SLAIPSFLVM TIIYIYVALA AYNTGYLTLP MNNIENLVDD VANIAVIDSK1740
 1741 GRRRPGGSEK MNPDATTAQT MGAQKKKLEW KAIWNEGTDA VMDIPIGGVC EVLYGDEGNG1800
 1801 EDLESEHTGI GGKPDCLVRK IYQIPTGYIR KMEREQVKKG ASAEPAPTRL PPDQIQRIEV1860
 1861 NRLKAKALRE QREAEAARDN RAAAAASVGA GDPGAGSTVA GTKRPYSATL TSRTPSSLRD1920
 1921 GRAYNTSEQR PLDSIRPARN FSKYVEYDFS KMTDTKGGFL TAEDDPHNKV LHSDREYDGK1980
 1981 PAHMTQKEWE RQQLLQNLRK EKAGPFEPGL SVLSKRAEQK KCRECGTVEI DWKWEEIFKC2040
 2041 CVCHGCKDKY PDKYSLLTKT EAKEDYLLTD PELKDEELLP HMERPNPHKS TWNNMMLFLR2100
 2101 YQVEEYAFSP KKWGSPEALD AEFERREAEK KRRKEAQFKT KLQDLKKRTR VEAYRRSRLA2160
 2161 AEGGAGGNFG DDLGGRRKHV HQWGRAVENP ETGIGVKTCV DCGMEVEELE F

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle