YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119184381, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQIRGTAGY NLGHSNPFVG PGRADATNDP SPLDAIREQT SKIEDWLETI SDPIKPYLPA  60
   61 IGRFLIVVTF LEDSLRILTQ WGDQLSYLHE FRSFPRGISH IFLLLNVIAM LVCSVFVIAR 120
  121 KHSEYAVAGL LGVVVSQALG YGLVLDLTFF VRNLSVIGGL LMVLSDSWVR KKFVPAGLPQ 180
  181 LEEKDRKMYV QFAGRVLLIF LFIGFIFSGS WGFWRILVSI LGFVACVMVV VGFKAKWSAT 240
  241 ILVVVLSIFN ILVNNFWTLH SKHPHKDFAK YDFFQTLSIV GGLLLLVNMG PGQLSMDEKK 300
  301 KVY

Type	Start	End	Confidence
Cytoplasmic	1	59	0.69
Transmembrane Helix	60	77	0.40
Non-Cytoplasmic	78	97	0.65
Transmembrane Helix	98	118	0.95
Cytoplasmic	119	124	0.63
Transmembrane Helix	125	145	0.76
Non-Cytoplasmic	146	148	0.72
Transmembrane Helix	149	169	0.82
Cytoplasmic	170	187	0.95
Transmembrane Helix	188	207	0.91
Non-Cytoplasmic	208	212	0.69
Transmembrane Helix	213	233	0.88
Cytoplasmic	234	239	0.75
Transmembrane Helix	240	259	0.93
Non-Cytoplasmic	260	272	0.80
Transmembrane Helix	273	292	0.89
Cytoplasmic	293	303	0.82