YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90298511, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTQSTPSKQ TASSLEQLKM SDSPVKPLNF GLADKENAPL TSATESGLKK FDAEAVKPSA  60
   61 PEVPKKSLTP KELEAEEPLL QENPHRFVLF PLKYHEIWQM YKKAEASFWT AEEIDLSKDL 120
  121 HDWNHRLNDD ERYFISRVLA FFAASDGIVN ENLVERFSGE VQVPEARCFY GFQIMMENIH 180
  181 SETYSLLIDT YIKEPKQRTY LFDAIDTIPC IRKKADWAIR WIQDQESTFA QRLIAFAAVE 240
  241 GIFFSGSFAS IFWLKKRGLM PGLTFSNELI SRDEGLHTDF ACLLFSHLRH RPGPEAVQAI 300
  301 ITEAVEIEKE FLTDALPCAL LGMNSKLMCQ YIEFVADRLL VALGNKKFYN ATNPFDFMDN 360
  361 ISLSGKTNFF EKRVGDYQKA GVMASTQKKE DTEEAIENGG AFRFDEDF

Type	Start	End	Confidence
Non-Cytoplasmic	1	232	0.93
Transmembrane Helix	233	254	0.86
Cytoplasmic	255	408	0.85