YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119196363, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTVTRADS VEEQDPHNSR EDKKPKSRRP ANTAFRQQRL KAWQPILTPK TVLPLFFAVG  60
   61 IIFAPIGGLL IWASSQVEEI VIDYSKCETD APLGSGNARS IPEENVRASF RSQKPISQLQ 120
  121 WYRTENQAVQ LHSGVVKNDT TVCSLIFEIP NDIGPPVYFY YRLDKFYQNH RRYVKSLDLE 180
  181 QLKGKALSNG TIGSSACDPL RLNPDGKAYY PCGLIANSLF NDTFSSPVKV GTSPNETFEM 240
  241 TNQGISWASD RELYGPTEYS YDQVVPPPNW KEMYPDDYTE DYPPPNLREW EEFQVWMRTA 300
  301 GLPTFSKLAR RADNKTMTAG LYRIDINYYF PVLKYDGKKS IVLTTTTVMG GKNPFMGIAY 360
  361 VVVGGLCIVL GALFTLAHLI KPRKLGDHRY LTWNNEQSPT AMTTGRDAGF GG

Type	Start	End	Confidence
Cytoplasmic	1	50	0.94
Transmembrane Helix	51	73	0.90
Non-Cytoplasmic	74	355	0.97
Transmembrane Helix	356	379	0.91
Cytoplasmic	380	412	0.95