YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119196557, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIIERVKDL YSKKEPEPLI STNVAVMLSI ACTLLYVVPL YMSKASRPSP TLSRDAPSVI  60
   61 KYRVRAVMTA CFICSLGTLY LIVSKGHTTY LEALRLLGWW PLGPLEIVKS LFLTAILFLG 120
  121 FLFERGVAEG QWRNWIRWQS LIEPLTEWAG WRNYVAGPIT EEVVFRSIIV ALHLMAKISP 180
  181 TSIVFVSPLY FGIAHVHHFY EFKLTHAYAP LGTMLFRTVF QFAYTTIFGW YAAFLYLRTG 240
  241 SLFAVIAVHS FCNCCGLPRL WGRVQVDMPI EPIIVRGKED EEFPAQRVEQ KQLGIGWTVA 300
  301 YYVILVAGAV VFWSQLWPLT ESPLALASF

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.80
Transmembrane Helix	19	42	0.84
Cytoplasmic	43	61	0.80
Transmembrane Helix	62	84	0.88
Non-Cytoplasmic	85	104	0.79
Transmembrane Helix	105	127	0.86
Cytoplasmic	128	173	0.78
Transmembrane Helix	174	197	0.76
Non-Cytoplasmic	198	217	0.58
Transmembrane Helix	218	252	0.65
Cytoplasmic	253	292	0.77
Transmembrane Helix	293	317	0.85
Non-Cytoplasmic	318	329	0.81