YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|222053516, gi...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFFRSIRFR LTLWYLVTLA LILLLFSTFI YLTISKRLYA EVDRELLAIA EAVASPTLEP  60
   61 FRRSAPTVLD QILEDFIGPS VANKFVQIAD ASGKVFSSST NLQNISLPLD KTSLIISGIG 120
  121 NSTYHTHSNS LRYPIRSITM PIMENGRMVQ VVQVGMLLDY TSDILEKLLV IFAVSIPLAL 180
  181 IMLWYAGWFL AGRALKPVEL ITTSARKISA ENLGHRLEII NPSDEIGRLA KTFNITLDRL 240
  241 ENAFNRTRQF SMDVSHELRT PLTILRGETE VGLRWGGDAD ELKKILRSNM EEINRMSDII 300
  301 GDLLELSRAE EGKLVLDPVP VELHELLQDI CTKAAPDARE KRIILDLPNA ASLHVAGDPA 360
  361 RLQQIFLNLI DNAIKYTPCD GKVSLAVDSE PGWAKVSVTD TGPGIPEADL PHIFEQFYRV 420
  421 DKARNRNDGG SGLGLSMVRA FSEAHGGRVE IFSLPGSGCT FTVFLPLSHH

Type	Start	End	Confidence
Cytoplasmic	1	10	0.67
Transmembrane Helix	11	34	0.83
Non-Cytoplasmic	35	167	0.73
Transmembrane Helix	168	189	0.85
Cytoplasmic	190	448	0.67
Transmembrane Helix	449	465	0.37
Non-Cytoplasmic	466	470	0.53