YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110829741, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMPTTEASA VPAPGRARVS RSSREHLRLR AAGRRALGYL RLRLRYEHLR AAGRRALGYL  60
   61 RLRLRYERLR AAGRRALGYL RLRLRYERLR AAGRRALEYL RLRLRYEHLR AAGRRSWLLA 120
  121 ALAGAAVMSV PVWAQTAGAL PLIVGNGPAG SSYSVPIQTL LFFTALTFLP AVLLMMTGFT 180
  181 RIVIVLSLLR QALGTQSVPP NQIIIGLSLL LTFFVMGPTF ERVYQEAYLP YTNDSISFEQ 240
  241 ALDKAEAPMR SFMLKQTRQS DFGLFARLAR LDPQVSAQTA PLRVLVPAFV TSELKSAFQI 300
  301 GFMIFIPFLV IDMLVSSILM SLGMMMLSPV LVALPFKLML FVLADGWNLL LGSLAASFVI 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	116	0.99
Transmembrane Helix	117	137	0.92
Non-Cytoplasmic	138	159	0.85
Transmembrane Helix	160	183	0.88
Cytoplasmic	184	199	0.81
Transmembrane Helix	200	220	0.81
Non-Cytoplasmic	221	299	0.87
Transmembrane Helix	300	323	0.81
Cytoplasmic	324	333	0.52
Transmembrane Helix	334	356	0.76
Non-Cytoplasmic	357	360	0.63