YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111057731
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGPSFIQRA KSAVPLGYTT PDFPSLYWPL PIGAATSYYL YKPSDILRFT VYWTLLLVGG  60
   61 IHLIVALWAC IVQWRNWKLI WIAPALFIVV GGIEALVSGA IVGGLLGGVY QAGYFEMSTW 120
  121 IPFVWGIINT LVLILSSFAI YGGL

Type	Start	End	Confidence
Cytoplasmic	1	17	0.63
Transmembrane Helix	18	40	0.57
Non-Cytoplasmic	41	48	0.69
Transmembrane Helix	49	72	0.90
Cytoplasmic	73	79	0.66
Transmembrane Helix	80	106	0.85
Non-Cytoplasmic	107	120	0.61
Transmembrane Helix	121	142	0.93
Cytoplasmic	143	144	0.64