YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|111062126
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAANGSPERR RRSMGMYRRG SNMSEASFME DVEMAQDEVY ELGPMPRPSR RPQGSSRQPG  60
   61 TQLTPKIQVF SGPMSESVPT SVSAFSHRRQ RADSSASLTS FAYYDEDQDS DGLEDEAIIE 120
  121 EDGEYEGYTI EELEELEAGI SSQSSTTMSP SPSRRNSTGS RKSRKSVDRP LLRRHSSTGS 180
  181 AGSGADWKGR RSNQKIYIMT EDLTIVVAGF NTSPVGFAVY SVLCVATLGI AWLLFRWLPR 240
  241 WRVWLTGRSI PLKDCDWVVI ENQWGEFAVQ NVDRQIYGRS LSTVFGDTEK SRFQEWDEDD 300
  301 DPLIKELRCL DYRYIRFVHH PLKDKFVLAN TWKDPAWTEV TALRDGLDNE ERDYRELVFG 360
  361 KNLIDIAEKT TGQLLVDEVF HPFYIFQVAS LLLWSLDEYY YYACAIFIIS AVSIVTTLVE 420
  421 TKATMKRLRE VSRFDCEVRV LRSGFWTHVD SAELVPGDVY EVTDPALTQF PCDSLLLSGD 480
  481 CIVNESMLTG ESIPVSKVPM TNAALDHLDL SASAVHPEVA RHMLFSGTKI IRARRPHEDH 540
  541 IDDEAAALAM VVRTGFNTTK GALVRSMLFP KPSGFKFYRD SFRYISVMAV IAMIGFVASF 600
  601 INFVHLGLAW HLIVVRALDL ITIVVPPALP ATLTIGTSFA LSRLKQKQIF CISPQRVNVG 660
  661 GKLDVVCFDK TGTLTEEGLD VLGVRVVERP RNRFSELLAD PYDILPSSQH DRDPTVEYSA 720
  721 HKTILYTMAT CHALRKIDDE LLGDPLDVKM FDFTGWSYEE GEQKSGNNDD DPEQKLTPSV 780
  781 ARPPPGREFD IDDNEDDQNR KAIELGVLKS FEFVSQLRRA SVVVRQFGSK SGSIYVKGAP 840
  841 EVMKDICRPE TFPTDYEELL AFYTHRGFRV IACATKTIPK LNWLKVQKMK RDEAESQLDF 900
  901 VGFIIFENKL KPSTAPVIEE LERANIRKVM CTGDNILTAI SVARECGLIN KTAHCFIPHF 960
  961 VEGDSRTALS RLAWESVDDP VFKLDENTLK PLPPPPDVDV SLPYDVSNLR NYSLAVSGDV1020
 1021 FRWVVDFASE SVLREMLVCG QVFARMSPDE KHELVEKLQS IDYCVGFCGD GANDCGALKA1080
 1081 ADVGISLSEA EASVAAPFTS RQFDISCVPQ VIKEGRAALV TSFSCFKYMS LYSAIQFCSV1140
 1141 SFLYASASNL GDFQFLFIDL LLILPIAIFM GWSGAYPILS RKRPTANLVS RKVLTPLLGQ1200
 1201 MVFCIIVQAV AFSYVQKQEW YQPPVIDPNH SNSLNSQNTA LFLVSCFQYI LSAVVLSVGK1260
 1261 PYREPMSRNL PFITTIFVTL AITAYMLFDP SQTVMQWMEL TYLDVPFKLF IMGLGLGNFA1320
 1321 LAYVSERYLF PGLSKWIGVL KVKVNPRWRK ERKAYKVIAE GMRI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle