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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|111617486, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.81
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWTTPASTPP SEATSTLVMA WRSIISAASA ASASGAMVRG PACITSPAVT LRRSAPASMR  60
   61 RRRSPSVKMP RMRPCASVMA DAPSRLALIS RINSLNEASG GTRGTSAPER MTSLTCVSSL 120
  121 RPSAPPGWER AKSSERKPRA SSSATARASP MASWAVVLVV GARLSGQASR STPQSSTRSA 180
  181 WRARVDSKPP VIATSGTPRR RSTGNSTVSS PLSPLLEMAS TRSPVVTMPR SPWLASAGCT 240
  241 KKAGVPVEAS VAAILRPTWP LLPMPMTTTR PEVASTRRTT SAKAPPTRAA SAERAAASVS 300
  301 KVSRARRTAR SAEKGAGGRA CPCAGGAESI RGFYSAAPHP HARGPESPPR PASRCLWGVR 360
  361 QGNPRETARA RLASGMSSLA LTLLYLLAAV LGVVACRSLK LPPMLGYLAA GILIGPHALA 420
  421 LTQNSEGVRH LGEFGVVFLM FSIGLEFSLS KLRAMRRFVF GLGLLQVALT LTAGMVGMLL 480
  481 LSHFAGGLWR MGWQTALALG GTLVMSSTAI VVKLMSERAE LESEHGRRVL GVLLFQDLAV 540
  541 VPLLVLIPAL GSSPERLLVA LGLALLKATV LVGVLLVGGQ RVMRWWLTLV ARRKSDELFM 600
  601 LNLLLITLGL AWLTEAAGLS LALGAFIAGV LVSETEYRHQ VGTDIRPFHD VLLGLFFITV 660
  661 GMMLDWHILL ERWALVLVLL TVPLLLKAGV ILLLARGMGA TTGVSLRTGL YLAQAGEFGF 720
  721 VLLSLTQEHG LVEPALMNPV LAAMVLSMLA TPFLIQYSNP IVMKLVASDW LQQSLQMTTI 780
  781 ARKAINTSGH VLICGYGRCG QNLARMLERE HIPYMALDLD PDRVRQAAAA GDSVVYGDAT 840
  841 RLQALMAAGL VRASAVAVTY LDIPATLKVL ANTRAHAPQV PVVVRTQDDL YLDKLQAAGA 900
  901 TEVVPEAIEG SLMLASHALA LVGVPMRRVL RLVQDQREAR YNLLRGYFHG ADDDTASERD 960
  961 QERLATVTLP PGAGTVGRPL SELPLHAMGV RAVNLRHKDG RSSTPTDDSV LSEGDTLVIS1020
 1021 GHPTALALAE DALLRG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle