YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126435366, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.97
Transmembrane Helix	26	46	0.93
Non-Cytoplasmic	47	62	0.79
Transmembrane Helix	63	84	0.88
Cytoplasmic	85	91	0.89
Transmembrane Helix	92	114	0.89
Non-Cytoplasmic	115	120	0.65
Transmembrane Helix	121	142	0.89
Cytoplasmic	143	151	0.80
Transmembrane Helix	152	172	0.94
Non-Cytoplasmic	173	180	0.82
Transmembrane Helix	181	203	0.92
Cytoplasmic	204	212	0.81
Transmembrane Helix	213	232	0.94
Non-Cytoplasmic	233	238	0.75
Transmembrane Helix	239	261	0.89
Cytoplasmic	262	278	0.83
Transmembrane Helix	279	300	0.93
Non-Cytoplasmic	301	317	0.90
Transmembrane Helix	318	339	0.89
Cytoplasmic	340	345	0.85
Transmembrane Helix	346	365	0.93
Non-Cytoplasmic	366	375	0.75
Transmembrane Helix	376	396	0.93
Cytoplasmic	397	411	0.81
Transmembrane Helix	412	434	0.87
Non-Cytoplasmic	435	477	0.93
Transmembrane Helix	478	499	0.94
Cytoplasmic	500	682	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSPAPTAA PPEAGSALIS PQRRNLIFVA VLLGMLLAAL DQTIVATALP TVVADLGGAG  60
   61 HQSWVVTSYL LASTIVTAIV GKLGDMFGRK TVFQAAVVFF LAGSVLCGLA GSMGMLVAAR 120
  121 ALQGVGGGAL MVTAMALIGE VIPLRDRGRY QGALGAVFGV TTVIGPLLGG FFTDHLSWRW 180
  181 AFWINVPVGI VVFFVAAAAI PALSRVGRAK IDYAGIVFVG LGASGLTLAT SWGGAEYAWT 240
  241 SPVIIGLFVA SALALAVFIQ VERRAAEPIL PMRLFASPVF TVCCILSFIV GFAMLGALTF 300
  301 LPTFMQFVDG VSATESGLRT LPMVAGLLIT STGSGAIVGR TGRYKIFPVL GTAIMTVAFV 360
  361 LLSRMDATTH LLQQSLYLFI LGTGIGLCMQ VLVLTVQNTA TFEDLGVATS GVTFFRTIGS 420
  421 SFGAAIFGSL FANFLDDRIG AALLSSGAPP VAAESPQALH RLAPDVAAPI VDAYADSLGL 480
  481 VFLCAAPIAA VGFLVALLLK EVPLREMETG TAVDLGEGFA MPGAESPEQM LESAVGRMLR 540
  541 HSPDIRLRSV AGRPGCELDV ARLWALLQIY RHNQVFGSAR LSEIADRLRI PCEVVEPVFD 600
  601 DLVAGGYAVR TGDLLWLSQS GVRQVDAVSS AFVGMIVDKL AQSPTFEGRP DRLQVEAALE 660
  661 RITHRMLVQR DWDWDDELER AQ