YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92910739, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRDPEGQRK GRAAGVHQGG RSRYREVCAA MKTFSERSPI VIGAIGCALT AGMVVAALNY  60
   61 DKLPFFDDSK GYSAYFAESG GIIAGAPVQV SGFRVGEVTS VELDGPRVLI KFGVDKGVRL 120
  121 GDRTEAAIKT KTLLGAKILE VSPRGDGEQR EAIPMDRTRP PYQLPDALGD LTTTISGLNT 180
  181 DQLSESLAVL ADTFHDTPPD VKVAVQGVAR FADTLNKRDE HLRNLLSNAN KATAVLAQRS 240
  241 DQVVSLIADT NALLLELQGQ SAALDQISGN ISAVTQQLKG FIGENRETLK PAIDKLNEVL 300
  301 AVVDNRKVQV QQAIKGLNSY ALGLGEAVSS GPFYKAYVAN LLPGQFLQPA IDAAFSDLGL 360
  361 DPNVLLPTDR VDPQVGQKAT PALPIPFPRT GQGGEPRMTI PDAITGKPGD PRYPYREPPP 420
  421 APPPGGPPPG PPIPTEQIPG LPGAGPSSVP APGEPAPAPL APATGDPAPA EDGQ

Type	Start	End	Confidence
Cytoplasmic	1	39	0.80
Transmembrane Helix	40	60	0.80
Non-Cytoplasmic	61	474	0.92