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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PCAT2_RAT
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRCAEAAAV AATVPGSGVG DSGLRPPMVP RQASFFPPPV PNPFVQQTRI SAARRLQMIL  60
   61 LGIILLPVRA LLVGLVLLLA WPFAVISTVC CPKKLTHPIS DWRRKITQPA LKFLGRAMFF 120
  121 SMGFRVTVKG KVASPLEAPI FVVAPHSTFF DGIACVVAGL PSLVSRNENA QTPLVGRLLR 180
  181 ALQPVLVSRV DPDSRKNTIN EIKKRAMSGG EWPQILVFPE GTCTNRSCLI TFKPGAFIPG 240
  241 VPVQPVLLRY PNKLDTVTWT WQGYTFIQLC VLTFCQLFTK VEVEFMPVQA PSEEERNDPV 300
  301 LFASRVRNLM AEALEIPVTD HTYEDCRLMI SAGQLTLPME AGLVEFTKIS RKLKLDWDGI 360
  361 RKHLDEYASI ASSAKGGRIG ASSAKGGRIG PVSDVLRQLF ALFDRNNDGS IDFREYVIGL 420
  421 AVLCNPANTE DIIQVAFKLF DVDEDGYITE EEFCTILQAS LGVPDLNVSG LFREIAQGDS 480
  481 VSYEEFKSFA LKHPEYAKIF TTYLDLQTCH VFSLPEDVQT APSVASNKVS PESHEEGTSG 540
  541 KKVD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle