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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|90399084
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.41
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYFLMFLLL LSIPLCKTDD QLTLGKPIFP SEMLISKGGI FALGFFSPAN FSNSLYVGVW  60
   61 FHNIPQRTVV WVANRDNPIT TPSSATLAIT NSSGMVLSDS QGHILWTTKI SVTGASAVLL 120
  121 DTGNFVLRLP NGTDIWQSFD HPTDTILAGM MFLMSYKSEI VGRLTAWRSH DDPSTGDFSF 180
  181 SLDPSSDLQG MTWNGTKPYC RNGVRTSVTV SGAQYPSNSS LFMYQTLIDS GNKLYYSYTV 240
  241 SDSSIYTRLT LDSTGTMMFL SWDNSSSSWM LIFQRPAAGS CEVYGSCGPF GYCDFTGAVP 300
  301 ACRCLDGFEP VDPSISQSGC RRKEELRCGE GGHRFVSLPD MKVPDKFLQI RNRSFDQCAA 360
  361 ECSSNCSCKA YAYANLSSGG TMADPSRCLV WTGELVDSEK KASLGENLYL RLAEPPVGKK 420
  421 NRLLKIVVPI TVCMLLLTCI VLTWICKHRG KQNKEIQKRL MLEYPGTSNE LGGENVKFPF 480
  481 ISFGDIVAAT DNFCESNLLG RGGFGKVYKR FPIYIDDNMK GILEGGTEVA VKRLNEGSGQ 540
  541 GIEEFRNEVV LIAKLQHRNL VRLLGCCIHE DEKLLIYEYL PNKSLDAFLF DATRKYVLDW 600
  601 PTRFKIIKGI AKGLLYLHQD SRLTIIHRDL KASNILLDTE MNPKISDFGI ARIFHGNQQQ 660
  661 ANTTRVVGTY GYMSPEYVLG GAFSVKSDTY SFGVLLLEIV SGLKISSSKL TPNFFSLTAY 720
  721 AWRLWKDGNA TELLDKFFVD SYPLHEAFSD VIYDFKSLME NSGVCCVRIL AGYLDHEGDA 780
  781 AAAPPRLDCT TDDDFSSAVS PPHNDVAQFT ALAELIPEHA RFNEDGMYHA IDIYLKTVVQ 840
  841 VLYHEQRRLR APSQPPSTAP SFCQSDDRLT PAKPLIFPGG DKLISDGGVF AVGFFSLTTT 900
  901 NSTPSLLYLG IWYNNIPERT YVWVANRDNP ITTHTARLAV TNTSGLVLSD SKGTTANTVT 960
  961 IGGGGATAVL QNTGNFVLRL PDHPTDTILP GLPGFKLWTN YKNHEAVRVV AWRVRRDPST1020
 1021 CEFSLSGDLD QWGLQIVIWH GASPSWRSGV WNGATATGLT RYIWSQIVDN GEEIYAIYNA1080
 1081 ADGILTHWKL DYTGNVSFRA WNNVSSTWTS PFERPGHGCL HYGACGPFGY CDITGSFQEC1140
 1141 KCLDGFEPAD GFSLNSSRGC RRKEELRCGG QDHFFTLPGM KVPDKFLYIR NRTFEECADE1200
 1201 CDRNCSCTAY AYANLRTILT TGDPSRCLVW MGELLDSEKA GAVGENLYLR LAGSPAVNNK1260
 1261 NIVKIVLPAI ACLLILTACS CVVLCKCESR GIRRNKEVLK KTELGYLSAF HDSWDQNLEF1320
 1321 PDISYEDLTS ATNGFHETNM LGKGGFGKGT LEDGMEVAVK RLNKDSEQGV EQFRNEVVLI1380
 1381 AKLQHKNLVR LLGCCIHGDE KLLIYEYLPN KSLDKFLFDH AMKSVIDWQT RFNIIKGVAR1440
 1441 GLLYLHQDSR MMIIHRDLKT SNILLDAEMN PKISDFGMAR IFGNSEQQVS TRRVVGTYGY1500
 1501 MAPEYAMEGI FSVKSDTYSF GVLLLEIAWN LWKDGMAEAF VDKMVLESCL LNEVLQCIHI1560
 1561 GLLSLKVHLR LAEGGLLIAF WEDVKGIVCK IADLFLRGAD KSRSGVTSLA HRTKFTVQKR1620
 1621 VVYGLVAKIK GANCSRFIAT GEPRTRPYEI YQIMACLPVF ISLLFLISSC KGDDQLTQAN1680
 1681 RLISPGDVLI SKGRVFALGF FSPTASNQSF FLGIWYHNIS ESERTYVWVA NRDNPITTPS1740
 1741 FATLAISNSS NLVLSDSGNH TLWTTNVTAT GGDGAYAALL DSGNLVLRLP NGTTIWQSFD1800
 1801 HPTDTLLMGM RFLVSYKAQV AMRCIAWKGP DDPSTGDFSI SGDPSSNLQI FLWNGTRPYI1860
 1861 RFIGFGPSSM WSSVFSFSTS LIYETSVSTD DEFYIIYTTS DGSPYKRLQL DYTGTLKFLA1920
 1921 WNDSASSWTV VVQRPSPTIV CDPYASCGPF GYCDATAAIP RCQCLDGFEP DGSNSSSRGC1980
 1981 RRKQQLRCRG RDDRFVTMAG MKVPDKFLHV RNRSFDECAA ECSRNCSCTA YAYANLTGAD2040
 2041 QARCLLWSGE LADTGRANIG ENLYLRLADS TVNKKKSDIL KIELPVITSL LILMCICLAW2100
 2101 ICKSRGIHRS KEIQKKHRLQ HLKDSSELEN DNLELPFICL EDIVTATNNF SDHNMLGKGG2160
 2161 FGKVYKGVLE GGKEVAVKRL SKGSQQGVEE FRNEVVLIAK LQHRNLVRLI SYCIHEDEKL2220
 2221 LIYEYLPNKS LDTFLFDAKR KSVLDWTTRF MIIKGIARGL LYLHQDSRLT IIHRDLKASN2280
 2281 ILLDTNMSPK ISDFGMARIF EGNKQQENTT RVVGTYGYMS PEYALEGSFS VKSDTYSFGV2340
 2341 LLLELAWSLW KDGNAMDLVD SSIRESCLLH EVLRCIQIAL SCVQDDPTAR PLMSSIVFML2400
 2401 ENETAALPTP KEPAYLTAMV YGTKDTRENK ERSVNNHCIG KKQSAYSKAR RRRLIHGKPQ2460
 2461 AKAKPAHHHQ PGSNTLNHNP HSTVEIWINP INQWRTGTLM DLRPEEIRTI CVNGTNPHPS2520
 2521 MGAPPDGKQP RRLRRCGIQD SPTDRSCKLS SMRRQIRFHP AAAAATAAAA ATATATAAIS2580
 2581 DESEVGIEGL MGTAFATVFV LVFLISLCKS DDQLTPAKPL HPGDMLISDG GVFALGFFSP2640
 2641 TKSNATLYVG IWYHKIPNRT VVWVANRDNP ITAPSSAMLF ISNSSDLVLS ESGGHTLWEA2700
 2701 RNNITTGGSG ATVVLLNSGN LVLRSPNHTI LWQSFDHLTD TILPGMKLLL KYNGQVAQRI2760
 2761 VSWKGPDDPS TGNFSLSGDP NSDFQVLVWN GTSPYWRSGA WNGALVSATF QSNTSSVTYQ2820
 2821 TIINKGNEIY MMYSVSDDSP SMRLMLDYTG TIKMLIWNSN LFAWSVLFSN PSYTCERYAS2880
 2881 CGPFGYCDAA EAFPTCKCLD GFKPDGLNIS RGCVRKEQMK CSYGDSFLTL PGMKTPDKFL2940
 2941 YIRNRSLDEC MEECRHNCSC TAYAYANLST ASMMGDTSRC LVWMGELLDL AKVTGGGENL3000
 3001 YLRLPSPTAV KKETDVVKIV LPVVASLLIL TCICLVWICK SRGKQRSKEI QNKIMVQYLS3060
 3061 ASNELGAEDV DFPFIGFEEV VIATNNFSSY NMLGKGGFGK VYKGILEGGK EVAVKRLSKG3120
 3121 SGQGIEEFRN EVVLIARLQH RNLVKLVGCC IHEDEKLLIY EYLPNKSLDA FLFDATRKTV3180
 3181 LDWPNRFKII KGVARGLLYL HQDSRLTIIH RDLKAGNILL DAEMSPKISD FGMARIFGGN3240
 3241 QQQANTTRVV GTYGYMSPEY AMEGIFSVKS DIYSFGILLL EIISGFRISS PHLIMGFPNL3300
 3301 IAYSWSLWKD GNARDLVDSS VVESCPLHEV LRCIHIALLC IQDHPDDRPL MSSVVFMLEN3360
 3361 NTAPLPQPKQ PIFFVHKKRA TEYARENMEN SVNGVSITAL EGR

YRC Informatics Platform - Version 3.0
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