YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94733753
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTYAQNSTSS SGDVDAPDVP DVIIVGAGVL GSSLASVLGQ DGRKVTVIER SLREPDRIVG  60
   61 ELLQPGGYRA LIELGLEKSV EGLNAQIVNG YIIHDTESRM VVEIPYSEDQ DQCGRAFHHG 120
  121 RFIMGLRRAA LAEPNVRFIE GTVTYLEEEN GCVKGVQYKD KDSGKIQRLH APLTVVADGC 180
  181 FSNFRKSLSS ETVQVCSNFV GCIMKNSPQL KPNYAELVLS CHGPLLIYQI SSTDTRVLVD 240
  241 IQGRLPKNLK QYMTEEIHPK LPDHLKEPFL LAVQNNRLKS MPASFLPSSP VSKPGVLLLG 300
  301 DAYNMRHPLT GGGMSVALND VRIWRRLLHH IPDLTDHTAL SKVKRILNRS TEFWSIQLYI 360
  361 KNNILSSFIN TIVFNNESLH PQAKKTFDWE RKLSHSFVVD ILAQTLHELF ASQDDSILYL 420
  421 RRACLCYFQL GGQCVSGPVG LLSVVLIIRL KPRPLTLIGH FIGVVFYAVY LNMKAEVRQD 480
  481 KAGALLRSLS ILYRAFMVIF PLICSEFKYP IYRHVKPSK

Type	Start	End	Confidence
Non-Cytoplasmic	1	425	0.62
Transmembrane Helix	426	448	0.63
Cytoplasmic	449	454	0.32
Transmembrane Helix	455	473	0.85
Non-Cytoplasmic	474	483	0.36
Transmembrane Helix	484	512	0.64
Cytoplasmic	513	519	0.42