YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110620064, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVETQDVIT GQKKKGSIIK NWSEKNESRI KEIKHSIRLF TKSPLAMLGL VIIVMFLLVA  60
   61 IFAPYIAPYG AEERNWKELK QPPSEKHIFG TDDTGGDIFS RIIYGSRTSL YIGFSVVSVA 120
  121 IILGTLVGAI SGYYGGKIDE LMMRVTDIFL AFPSLVLAMV ICASLGRSIE NVMLAMTIVW 180
  181 WPAYARLVRG QALSIRERKY IEAARAIGAS DFRIITKHLA PNSFSPIIVQ ATMDLGNVIL 240
  241 VAAGLSFIGF GAKPGQAEWG RMISEGAAYM LNQPWMATFP GLAILIVCLG FNLFGDGLRD 300
  301 ILDPRQRR

Type	Start	End	Confidence
Cytoplasmic	1	43	0.91
Transmembrane Helix	44	66	0.90
Non-Cytoplasmic	67	109	0.92
Transmembrane Helix	110	134	0.89
Cytoplasmic	135	144	0.80
Transmembrane Helix	145	165	0.90
Non-Cytoplasmic	166	171	0.66
Transmembrane Helix	172	188	0.84
Cytoplasmic	189	232	0.84
Transmembrane Helix	233	252	0.89
Non-Cytoplasmic	253	275	0.84
Transmembrane Helix	276	295	0.95
Cytoplasmic	296	308	0.83