YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VTI1B_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSAASSEH FEKLHEIFRG LHEDLRGVPE RLLGMAGTEE KKKLIRDFDE KQQEANETLA  60
   61 EMEEELRYAP LSFRNPMMSK LRTYRKDLAK LHREVRSTPL TATPGARGDM KYGTYAVENE 120
  121 HMNRLQSQRA LLLQGTDSLN RATQSIERSH RIAAETDQIG SEIIEELGEQ RDQLERTKSR 180
  181 LVNTSENLSK SRKILRSMSR KVTTNKLLLS IVILLELAIL GGLVYYKFLR RH

Type	Start	End	Confidence
Cytoplasmic	1	201	0.66
Transmembrane Helix	202	226	0.83
Non-Cytoplasmic	227	232	0.58