YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113530387, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.95
Transmembrane Helix	59	81	0.93
Non-Cytoplasmic	82	113	0.95
Transmembrane Helix	114	135	0.94
Cytoplasmic	136	148	0.81
Transmembrane Helix	149	169	0.95
Non-Cytoplasmic	170	187	0.86
Transmembrane Helix	188	210	0.88
Cytoplasmic	211	238	0.87
Transmembrane Helix	239	261	0.83
Non-Cytoplasmic	262	288	0.91
Transmembrane Helix	289	308	0.93
Cytoplasmic	309	337	0.94
Transmembrane Helix	338	360	0.94
Non-Cytoplasmic	361	391	0.96
Transmembrane Helix	392	413	0.92
Cytoplasmic	414	424	0.95
Transmembrane Helix	425	449	0.89
Non-Cytoplasmic	450	456	0.90
Transmembrane Helix	457	477	0.90
Cytoplasmic	478	525	0.92
Transmembrane Helix	526	544	0.90
Non-Cytoplasmic	545	564	0.89
Transmembrane Helix	565	586	0.95
Cytoplasmic	587	602	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTAAPANT SATMPATDTI PAPATSGPAG PANPGAQPAP PAVVATAVRA HWTDRLAHVL  60
   61 LALAALALAC FVLAPIVMIL AKSVQNRDGS LAGIAHFRAY FESPALLRSV WNSLWVSALA 120
  121 TCITLPLAFS FAYALTRSRI ACKGLLRNLA LIPLLAPSLL AAISFIFWFG NQGLFKPWMG 180
  181 STQIYGPLGI VASLVFATFP HALMILITAL SLTDARLYEA ADALGTSTVR KFFTITVPGA 240
  241 RYGLVSAAMV VFTYAISDFG IPKVIGGNFH MLATDIYKLV IGMQDFSQGA VVSLMLLVPV 300
  301 AVTYCVDARV QRRQMALMSA RSVPYVPRRS RRFDLAMAMF CWLMAALMLA VMGMAIYASF 360
  361 VKLWPYNFSL SLNHYRVGLV EGGVVDSYLN SLRMAGLAAV IGPVFIFATA YLLEKTRGMD 420
  421 WLRSFVRLMA VLPMGVPGLV LGLGYIFFFV PQANPMHGLY QTLGILVLVT IVHYYASCHL 480
  481 TAVTALKQLD SEFEAVSASL KVPFYKTFFK VTVPACLPAI LEISRYLFIN AMTTVSAVVF 540
  541 LYGADTKLAS VEIVNLDESG DIGPAAAMAT LVVLTSAFAC LLYYLLQRVL DCKTQAWRQG 600
  601 ND