YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116696037, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.91
Transmembrane Helix	8	30	0.91
Cytoplasmic	31	41	0.91
Transmembrane Helix	42	64	0.91
Non-Cytoplasmic	65	83	0.92
Transmembrane Helix	84	106	0.90
Cytoplasmic	107	113	0.93
Transmembrane Helix	114	136	0.93
Non-Cytoplasmic	137	141	0.82
Transmembrane Helix	142	161	0.96
Cytoplasmic	162	204	0.93
Transmembrane Helix	205	226	0.84
Non-Cytoplasmic	227	234	0.69
Transmembrane Helix	235	253	0.95
Cytoplasmic	254	262	0.80
Transmembrane Helix	263	282	0.94
Non-Cytoplasmic	283	288	0.85
Transmembrane Helix	289	308	0.94
Cytoplasmic	309	339	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTFATAPMW AGFLVLVLGT LVVDVFVLGG RHAHRVSTRE ALGWTLAWST LAVLFGIALW  60
   61 WLLAGSAGRE TADRKVLEFY TGYLIELSLS VDNMFVFAMI FGYFAVPPEL QRRVLLFGVV 120
  121 GAIVMRAVMI LLGVWLISEF SWILYVFGVF LLFTGIKMLF VSRRAPDLSR NPIVRFLCAH 180
  181 MRITADYHGE HFFVRVDGLR HATPMFLVVL LVEATDLVFA VDSIPAIFAV TTDPFIVFTS 240
  241 NIFAIMGLRA LYFLLANLAQ HFHYLKYGLA IVLAFIGAKM LAEPWFHVPV HWSLGAVAMT 300
  301 LFVSVLVSRA RARRTLAHAG DELGGHCAPR ERRAGNRRT