YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90819607
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.75
Transmembrane Helix	50	71	0.92
Non-Cytoplasmic	72	156	0.53
Transmembrane Helix	157	181	0.86
Cytoplasmic	182	192	0.41
Transmembrane Helix	193	212	0.81
Non-Cytoplasmic	213	238	0.59
Transmembrane Helix	239	259	0.90
Cytoplasmic	260	279	0.62
Transmembrane Helix	280	301	0.84
Non-Cytoplasmic	302	348	0.65
Transmembrane Helix	349	372	0.77
Cytoplasmic	373	377	0.47
Transmembrane Helix	378	398	0.77
Non-Cytoplasmic	399	418	0.57
Transmembrane Helix	419	441	0.84
Cytoplasmic	442	449	0.50
Transmembrane Helix	450	469	0.76
Non-Cytoplasmic	470	644	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEIVGLREG SPRKPVPLQE LWRPCPRIRR NIQGSLEWLK ERLFRVGEDW YFLVALGVLM  60
   61 ALISYAMNFA IGRVVRGSGI PEVKTILTGV ILEDYLDIKN FGAKVVGLSC TLATGSTIFL 120
  121 GKLGPFVHLS VMIAAYLGRV RTKTVGEPEN KTKEMELLAA GAAVGVATVF AAPISGVLFS 180
  181 IEVMSSHFSV WDYWRGFFAA TCGAFMFHLL AVFNSEQETI TSIYKTSFPV DIPFDLPEIF 240
  241 FFVALGAICG ILSCGYNYCQ RTSLFFLKSN GFTSKLLATS KPLYSALAAV VLASITYPPG 300
  301 VGRFMASRLS MSEYLETLFD NNSWALMTKN SSPPWSAEPD PQNLWLEWCH PQMTVFGTLV 360
  361 FFLVMKFWML ILATTIPIPA GYFLPIFVYG AAIGRLFGEV LSLAFPEGIV AGGKVSPIMP 420
  421 GAYALAGAAA FSGAVTHTLS TALLAFEVSG QIVHALPVLM AVLAANAICQ SYQPSFYDGT 480
  481 IIVKKLPYLP WIRGRKIGSH LVTVGHFMNC TLTTLAKDMP LEEVIKVVIS TDVTQYPLVE 540
  541 TTESQVLVGI VKRTHLVQSL HTDSASWAPG QQPCLQDILA NGCPTQPVTL QLSTETSLHE 600
  601 THNLFELLNL QLLFVTSRGR AVGSVSWVEL KKAISTLTNP PAPK