YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91080475
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKWAGKKCR LLSMLGLTTS FFFVEIVVGY ITNSMALVAD SFHMLSDVAA LMVAFVSVKM  60
   61 SPKKWSKNTF GWARAEVLGA LVNAVFLVAL CFSITVEACK RFIESEAIHD PQLLVIVGAL 120
  121 GLFVNCIGLL LFHEHGSSHG HSHGRLAHSR NRLTQLAMTD DNENDESYPS PPPEKSSHHG 180
  181 HSSPGQMNMR GVFLHVLSDA LGSVIVIISA VVFWLSSWKY RNYIDPALSI LLVLLIMNSV 240
  241 WPLLRDSALI LLQTVPTHIQ VDAIQRRLLA KVDGVVGVHE FHVWQLAGDR IIASAHIKCR 300
  301 NLSEYMKIAE KVKEFFHNEG IHSTTIQPEF IDYQAPEITD TDQTEDCVLD CPKTTDSDDC 360
  361 VQNTCCGPSK QGRETPSPNN TPYMVRQRGN SSNSSNNSQE MNEMEAGVLL EKGNSPVPKD 420
  421 YNCISRGSQC SQYSVRPGSE PSF

Type	Start	End	Confidence
Cytoplasmic	1	10	0.94
Transmembrane Helix	11	32	0.90
Non-Cytoplasmic	33	40	0.70
Transmembrane Helix	41	58	0.64
Cytoplasmic	59	76	0.53
Transmembrane Helix	77	96	0.91
Non-Cytoplasmic	97	112	0.54
Transmembrane Helix	113	133	0.95
Cytoplasmic	134	191	0.63
Transmembrane Helix	192	215	0.91
Non-Cytoplasmic	216	222	0.55
Transmembrane Helix	223	244	0.88
Cytoplasmic	245	443	0.63