YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91083703
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.96
Transmembrane Helix	25	46	0.86
Non-Cytoplasmic	47	63	0.89
Transmembrane Helix	64	84	0.93
Cytoplasmic	85	94	0.70
Transmembrane Helix	95	114	0.95
Non-Cytoplasmic	115	121	0.73
Transmembrane Helix	122	144	0.89
Cytoplasmic	145	152	0.84
Transmembrane Helix	153	174	0.93
Non-Cytoplasmic	175	183	0.74
Transmembrane Helix	184	203	0.96
Cytoplasmic	204	394	0.98
Transmembrane Helix	395	416	0.89
Non-Cytoplasmic	417	431	0.88
Transmembrane Helix	432	451	0.93
Cytoplasmic	452	462	0.82
Transmembrane Helix	463	482	0.93
Non-Cytoplasmic	483	488	0.59
Transmembrane Helix	489	514	0.83
Cytoplasmic	515	522	0.77
Transmembrane Helix	523	544	0.90
Non-Cytoplasmic	545	553	0.85
Transmembrane Helix	554	575	0.92
Cytoplasmic	576	590	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVGHQAKRQ EDEEESDAPA PPDGGWGWMV VFGSFMIHII TDGVTYSFGV FYDEFLDYFQ  60
   61 EGKAATAWVL SILVGVTLCS GPISSSFVNR WGCRPVTIAG AIIGSICMII SVFAQNVTTL 120
  121 YFTIGIGTGF GFGLIYLPAI VSVTTYFEKK RSLATGIAVC GSGFGTFIFA PIITRLLVEY 180
  181 GWRGAMLIIA GIVLECIVFG ALFRPLETEE DKNLKPPPKI TLKSIEAKVD LHVSEHNLQQ 240
  241 ISTMNGNGEI HRPHSLGHFS MPRGTKLLEP SKNISNGKTY EASRLALSQP MLALADRPFQ 300
  301 HRYGSQNLRK HGPLDKPDVF YQGSLMNIPS YRSRLDLKNR EEMAFLGRRQ SSISYRRRHV 360
  361 DTNKSQTTMC GCIPCSQETK DTLKEMLDFS LFHDWIFILF ITSNFLTSIG FNIPYVYIVP 420
  421 KAKSMNLSAK EASMLLSIIG FANTIGRIVL GYFSDKAWVN RLMVYNWCLT LCGIATTFSA 480
  481 FCPTFYTLAL FASVFGFTIG AYVGLTSVIL VDLLGLERLT NAFGLLLLFQ GIASLIGPPM 540
  541 AGALYDATLS YDPGFYLSGI TISLSGVILF FIPPIQRCKD RKQERNPTDI