YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91087373
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.97
Transmembrane Helix	17	38	0.89
Non-Cytoplasmic	39	93	0.92
Transmembrane Helix	94	111	0.92
Cytoplasmic	112	119	0.92
Transmembrane Helix	120	143	0.92
Non-Cytoplasmic	144	159	0.87
Transmembrane Helix	160	181	0.87
Cytoplasmic	182	187	0.86
Transmembrane Helix	188	209	0.91
Non-Cytoplasmic	210	215	0.73
Transmembrane Helix	216	236	0.94
Cytoplasmic	237	280	0.97
Transmembrane Helix	281	302	0.88
Non-Cytoplasmic	303	319	0.84
Transmembrane Helix	320	340	0.92
Cytoplasmic	341	347	0.85
Transmembrane Helix	348	368	0.89
Non-Cytoplasmic	369	373	0.73
Transmembrane Helix	374	395	0.86
Cytoplasmic	396	406	0.81
Transmembrane Helix	407	428	0.83
Non-Cytoplasmic	429	436	0.80
Transmembrane Helix	437	459	0.91
Cytoplasmic	460	666	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESVSSGKLT LRSKLRLVFN NITVEPILVC FVLPCVMANL ATQNLNMDKA CRVNLHLSEQ  60
   61 VCDGLALRDV SRYNQSDEVA VQKLVATMNA WKNVIQSFVP SLLLLFLGSW SDRHKRRKPC 120
  121 FLGPIIGEMV TCMGLLLCTF FYYQLPVEYN VFFEAVPPSL TGGWFAMFMA VFSYVGGITS 180
  181 VQTRTLRIGA VNIFVNISFT VGNALSGILY QHVGYYGIFS LSLLFYTIGF LYGLLIVKEI 240
  241 PNEGKTTNHK SFLRDFFDTK HIAETFEVAF KEGKRNRKAR ICAMMVLCMV IMGPMHGEVS 300
  301 VLYLFVRYKF GWNEIDYSIY STFYVITHMF GTLLSLILFT KVLKIDDAAL GVVSSASRIV 360
  361 ASMVYAFAPN AFTFYVGALI EIFNGTTFIA MRSIISKLVP PDELGKINSL FGLSEAMVPI 420
  421 IYGPLYSIVY KHTINYLPGT FFIVGGALTV PSLFIFCWLY REHKKDLEED AQTQISKSSV 480
  481 DKSIPPAPMG PPSEECYICG KMFGTHSIKI HEKQCLKKWH VENDSLPADI RAPEPKKGEV 540
  541 GKVRQSPEPS SRRSSVEKEE KPSSGKKSPM FPCYICGRLF TVNSIYIHEP QCLKMWKIEN 600
  601 DKLPPHKRRP QPLKPDIKFT QDGKIDYEAT NEAKWQSHLS QLVPCQFCSR TFNPDRVEVH 660
  661 ERSCKG