YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91069923
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKRKKRVRR YYKNFKKTNF VLLNKIFRIL SWLLPGLVIK RWMFTSAIGF LTTLLGLVIW  60
   61 TNLRPLYWLI EIFFGVMTGL TSILPVSLIG PLIFVIGLLL IGIGQNRSIN SIQKALVPEK 120
  121 DTYLVDALRV KSKLNRGPNI VAIGGGTGLS TLLKGLKNYS SNITAIVTVS DDGGSSGILR 180
  181 KQLGVQPPGD IRNCLAALSN EEPTLTRLFQ YRFSGGSGLE GHSFGNLFLS ALTTITGSLE 240
  241 KAVQASSKVL AVQGQVLPAT NIDVMLWAEL EDGERIFGES KISKSKKLIS RIGYFPENPS 300
  301 ALPSALESIK EADVIVLGPG SLFTSLLPNL LVPEIVDALL ESSAPKIYIS NLMTQPGETD 360
  361 GLDVYQHVKA IEKQLSNFGV NTRIFNSVLS QIQFEKSPLV EYYESRGAEP VLCDKEKLLS 420
  421 EGYYVLQAPL YSKRITPTLR HDPRRLARAV MFIYRKLKKL N

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	39	0.88
Non-Cytoplasmic	40	43	0.75
Transmembrane Helix	44	63	0.90
Cytoplasmic	64	78	0.64
Transmembrane Helix	79	103	0.90
Non-Cytoplasmic	104	461	0.95