YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91805981, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.99
Transmembrane Helix	40	62	0.92
Non-Cytoplasmic	63	89	0.90
Transmembrane Helix	90	107	0.97
Cytoplasmic	108	120	0.92
Transmembrane Helix	121	144	0.84
Non-Cytoplasmic	145	152	0.77
Transmembrane Helix	153	174	0.91
Cytoplasmic	175	181	0.74
Transmembrane Helix	182	198	0.97
Non-Cytoplasmic	199	216	0.84
Transmembrane Helix	217	238	0.94
Cytoplasmic	239	256	0.95
Transmembrane Helix	257	278	0.94
Non-Cytoplasmic	279	298	0.92
Transmembrane Helix	299	321	0.85
Cytoplasmic	322	330	0.61
Transmembrane Helix	331	348	0.95
Non-Cytoplasmic	349	356	0.73
Transmembrane Helix	357	377	0.93
Cytoplasmic	378	397	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMSKASKQT TRHESEHVQN PEPDQILSPR RSLELKQRKW WISVSLCLFL VLLGDSLVML  60
   61 LLNFFYVQMK QDRREEYDQD LQYKGTWTQA LIQNAAFPIL IPLFFIFPKP KQHLETNNTS 120
  121 FLSLRLFFLY LSLGVLVAAH SKLFALGKLV SNYGIFSLIS TTQLIFTAVL TAIINRFKFT 180
  181 RWIIISILLT IVIYVLGTPD FGGQPHDGEE FGYNIQAWLA FSATIAFSLS LCLIQLGFEK 240
  241 LQVKTKRYGN EKVFRMVLEM QICVAFVASV VCLVGLFASD EYKELKGDSK RFKKGETYYV 300
  301 LSLVGLALSW QVWAVGMIGL VHYVSGLFGD VVHMCASPFV ALFVVLAFDF MDDVFSWPRI 360
  361 GALIGTVLAL GSYFYTLHKR NKKKMAELNQ SENNVEV