YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX26_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.99
Transmembrane Helix	42	65	0.91
Non-Cytoplasmic	66	85	0.83
Transmembrane Helix	86	109	0.80
Cytoplasmic	110	122	0.87
Transmembrane Helix	123	142	0.95
Non-Cytoplasmic	143	159	0.78
Transmembrane Helix	160	178	0.95
Cytoplasmic	179	189	0.81
Transmembrane Helix	190	211	0.94
Non-Cytoplasmic	212	227	0.69
Transmembrane Helix	228	251	0.73
Cytoplasmic	252	261	0.75
Transmembrane Helix	262	280	0.59
Non-Cytoplasmic	281	305	0.59
Transmembrane Helix	306	326	0.72
Cytoplasmic	327	338	0.77
Transmembrane Helix	339	362	0.92
Non-Cytoplasmic	363	382	0.81
Transmembrane Helix	383	405	0.79
Cytoplasmic	406	412	0.65
Transmembrane Helix	413	436	0.86
Non-Cytoplasmic	437	442	0.71
Transmembrane Helix	443	464	0.92
Cytoplasmic	465	489	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKKSGGTKA IEEATVPLLE CHNAAEEGGG MKREIWIETK KIWYIVGPSI FTGLATYSIL  60
   61 IITQAFAGHL GDLELAAISI INNFTLGFNY GLLLGMASAL ETLCGQAFGA REYYMLGVYM 120
  121 QRYWIILFLC CILLLPMYLF ATPILKFIGQ SDDIAELTGT IALWVIPVHF AFAFFFPLNR 180
  181 FLQCQLKNKV IAISAGVSLA VHILVCWFFV YGYKLGIIGT MASVNVPWWL NIFILFLYST 240
  241 RGGCTLTWTG FSSEAFTGLL ELTKLSASSG IMLCLENWYY KILMLMTGNL VNAKIAVDSL 300
  301 SICMSVNGWE MMIPLAFFAG TGVRVANELG AGNGKGARFA TIVSITLSLM IGLFFTVIIV 360
  361 IFHDQIGSIF SSSEAVLNAV DNLSVLLAFT VLLNSVQPVL SGVAVGSGWQ SYVAYINLGC 420
  421 YYLIGLPFGL TMGWIFKFGV KGIWAGMIFG GTAIQTLILI IITTRCDWDN EAHKSSVRIK 480
  481 KWLVSDAGN