YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|237707182, gi...
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLYSEQCRP GESSLFLHRA DKNMHVYCIS FSVTTFVRLL TNFQKERDMT ALNKKWLSGL  60
   61 VAGALMAVSV STLAAEQKTL HIYNWSDYIA PDTVANFEKE TGIKVVYDVF DSNEVLEGKL 120
  121 MAGSTGFDLV VPSASFLERQ LTAGVFQPLD KSKLPEWKNL DPELLKLVAK HDPDNKFAMP 180
  181 YMWATTGIGY NVDKVKAVLG ENAPVDSWDL ILKPENLEKL KSCGVSFLDA PEEVFATVLN 240
  241 YLGKDPNSTK ADDYTGPATD LLLKLRPNIR YFHSSQYIND LANGDICVAI GWAGDVWQAS 300
  301 NRAKEAKNGV NVSFSIPKEG AMAFFDVFAM PADAKNKDEA YQFLNYLLRP DVVAHISDHV 360
  361 FYANANKAAT PLVSAEVRDN PGIYPPADVR AKLFTLKVQD PKIDRVRTRA WTKVKSGK

Type	Start	End	Confidence
Cytoplasmic	1	55	0.53
Transmembrane Helix	56	75	0.72
Non-Cytoplasmic	76	418	0.98