YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92870445
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.94
Transmembrane Helix	31	52	0.90
Cytoplasmic	53	61	0.81
Transmembrane Helix	62	78	0.93
Non-Cytoplasmic	79	92	0.84
Transmembrane Helix	93	113	0.88
Cytoplasmic	114	126	0.76
Transmembrane Helix	127	148	0.90
Non-Cytoplasmic	149	160	0.87
Transmembrane Helix	161	182	0.92
Cytoplasmic	183	195	0.86
Transmembrane Helix	196	217	0.88
Non-Cytoplasmic	218	226	0.77
Transmembrane Helix	227	249	0.92
Cytoplasmic	250	264	0.92
Transmembrane Helix	265	290	0.83
Non-Cytoplasmic	291	343	0.65
Transmembrane Helix	344	369	0.82
Cytoplasmic	370	376	0.44
Transmembrane Helix	377	394	0.47
Non-Cytoplasmic	395	406	0.53
Transmembrane Helix	407	430	0.84
Cytoplasmic	431	800	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSNTTAGNV CPPPMKSTSN GVFQGDHPLD YALPLAILQI CLVLVVTRGL AYLLKPLRQP  60
   61 RVIAEIVGGI LLGPSAFGRN KSYLHAVFPP KSLPVLDTLA NLGLIFFLFL AGIELDPKSL 120
  121 GKTGGRVLAI AMVGISLPFA LGIGSSFVLK ETIAKDVNTS AFLVYMGVAL SITAFPVLAR 180
  181 ILAELKLLTT SVGRMAMSAA AVNDVAAWIL LALAVALSGN SQSPLVSLWV FLAGCGFVVC 240
  241 SILIVLPIFK WMAQQCHEGE PVDELYICAT LASVLAAGFV TDAIGIHAMF GAFVFGILVP 300
  301 KDGPFSGALV EKIEDLVSGL LLPLYFVSSG LKTNIATIQG LQSWGLLVFV TFTACFGKIV 360
  361 GTIVVSLLCK VSFNESLVLG FLMNSKGLVE LIVLNIGKDR KVLNDETFAI MVLMALVTTF 420
  421 MTTPLVMAAY KRKAKISDYK YKTVERKNAD SELRILACFH GARNIPSVIN LIEASRGIKK 480
  481 RDALCVYAMH LKEFSERSSS ILMVQKVRKN GLPFWNKGHR ADSDHVIVAF EAYQKLSQVC 540
  541 VRPMVAISSM ANIHEDICAT AERKRAAVII LPFHMQQRLD GSLDVTRNDF RFVNKRVLEH 600
  601 APCSVGIFVD RGLGGTCHVS ASNVSYCVAV LFFGGGDDRE ALAYGARTAE HPGIRLVIIR 660
  661 FLVESTILGE ISSVDVGDSS IGKSISEDEE FLAEFKLKTA SDDSVIYEEK IVKDAAETVA 720
  721 SIRKFNSCNL FLVGLRPTGE LACALERREC PELGPVGGLL ISQDCPTTAS VLVMQQYHNG 780
  781 VPMNFVPEME EHSHSHEGDT