YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92871680
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.44
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFFGIWRHS ELGPNKMEYA FLLLLLLFHI FLPHSYGKPN GVCVSQGGRY PPFKSEGNPP  60
   61 KRGPKDLTLC RVFRKKTCCD VTHTHPALLS VRKLSSGGEA SSECLHLWEL LECAICDPSV 120
  121 GTQPGPPLIC ASLCERIYEA CSNAYFSMDV KSQVLAPCGV NDFVCGRAAE WVSNGTDLCL 180
  181 AAGFRVKSSD IVHVASEETF CYGDKASLGS VADSWKASQF ESTKKGENSV IFDDFQQWTR 240
  241 DMPFKERVSW AIGGMVLTAG LVFISKRKSN SQRQKLAAIK RTARKLGSRM ADQQPSNAPE 300
  301 IRKRIS

Type	Start	End	Confidence
Signal Peptide	1	37	0.63
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	247	0.91
Transmembrane Helix	248	265	0.69
Cytoplasmic	266	306	0.62