YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92876972
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.26
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHALFQAA QILPMNSPIP SKTLSPKTFP KLPLLRNRHR RLVIRSWSAS PADVDSDTSF  60
   61 GSSLLERCFA APAAPPSASG NINPVMKGKY GAFGAVTLEK SKLEISQQQS NKSAPELATG 120
  121 GGGGDIGKII SYGGGDGGDD NGDDDDYFDD FDDGDEGDEG GLFRRRILLQ ELFDRKFVDA 180
  181 VLNEWQRTIM DLPAGFRQAY EMGLVSSAQM VKFLAMNARP TASRLISRKL PQGLSRSFIG 240
  241 RMLADPAFMY RFLLEQVATV GCSVWWEFTN RKDRIKQEWD LALINVLTAA ACNAVVVWSL 300
  301 APCRSYGNTF QFDLQNTLQK LPNNIFEMSY PLREFDLQKR VQCFLFKAAE LCMVGLSAGA 360
  361 VQGALSNTLA KKKEGRLSVT VPTVSSNALG YGAFLGIYAN LRYQLLCGFD RGMVRQFDVI 420
  421 GVALFFSTAF RVLNVQLGET SKRAWLGVEA DPLAQSDDLL KVYNRTSENV EQPSSSKWFI 480
  481 SKNAVVSGLG LLGIKQGNAD VSGAESSAPK ARRKRIVRKK VAAGSA

Type	Start	End	Confidence
Non-Cytoplasmic	1	251	0.52
Transmembrane Helix	252	266	0.26
Cytoplasmic	267	280	0.59
Transmembrane Helix	281	301	0.64
Non-Cytoplasmic	302	345	0.84
Transmembrane Helix	346	366	0.56
Cytoplasmic	367	376	0.57
Transmembrane Helix	377	399	0.61
Non-Cytoplasmic	400	416	0.78
Transmembrane Helix	417	435	0.64
Cytoplasmic	436	526	0.66