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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|92878470
Protein type: Transmembrane
Type Confidence: 0.70
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSPSSSYE VPHPHHLWMF DVFLSYHDKY IGKSFALDLS SALTQAGYAV YINNHDLTSG  60
   61 EQRNSAAIKA CRTSIIIFSS KFDGSTWFLE EMEKILECRR TIKQVFVPVF YDVDPSDVLK 120
  121 QKGVFGEAFV DCIARGILTE DSSIRYRDAL FEAANISGFR MMDTRSQYNE INDIVQGFCH 180
  181 LIEDQKSLFI AEHPVGVEAR VKDVIQLLNS EQAENTMIVG IWGMAGVGKT IIAKATYNQM 240
  241 SFTFDCKSIL KNVNETCKSG DDGLVSFQRQ LLLDICKTTK IHIDTVESGK KILQRSLCHK 300
  301 KVFLVLDGVN KLEQLNALCG DRDWFGHGSR IVITTSDKHI LRNLQLDHVY RMKYMDNTES 360
  361 LKLFSWHAFR TPSPKESYAD LCRDVVEYCG GLPVALEILG SYLFDRSVQE WKIALQKFKT 420
  421 ILPYQIEKKL RKNLDVLDHD NQDVFLKIAT LFIGMHKDDV IQTLNYSGHF PEIAISILED 480
  481 KSLLTIDGNN RIGMHTLLRA MGREIIRQQS MDMAATKMYD VFLSFRGEDC RAKFISHLYI 540
  541 SLQNSGLYVF KDDDGIQRGD QISVALIQAV GQSKISIVVL SKNFANSKWC MTELERIVEI 600
  601 SRTKGMVLVP VFYEVDPSEV RHQTGEFGKA FECLLSTKSV DEYTKRNWKA ALHEVGSIAG 660
  661 VVILKSSDES EDIKKIVDLV THLLDKTELF VADHPVGLES RVRDVIQLLS RQKSKDPQLL 720
  721 GIWGMGGIGK TTLAKAVYNK IRHDFDAKSF LFNVRDVWKV DDDKVSLQQR LLFDICKTTK 780
  781 IKIDSVESGK KILQERLCSK KIFLVIDDVN KLDQLNALCG DRKWFGKGSR ILITTRDDDL 840
  841 LSRLEVDHVY RMKEMDSSES LELFNWHAFK QSTSREGFTN ISRDVVKYSG GLPLALQVIG 900
  901 SFLSTKKIKA EWKDVLEKLK LIPNNEVLEK LRISFDGLSD DDVKDIFLDI AFFFIGMDRE 960
  961 DVTKILQDCG HFSVIGISVL VQQSLVTVDR KNKIGMHDLL RDMGREIVRK ISKDADKEPS1020
 1021 RLWHYEDVHK LPIDTSSLAV KGLSLKMSRM DSTTYLETKA FEKMDKLRFL QLVGIQLNGD1080
 1081 YKYLSRHLRW LSWHGFPLKY IPADFHQDTL VAVVLKYSNL ERVWRKSQFL VKLKILNLSH1140
 1141 SHNLRHTPDF SKLPNLEKLI LKDCPSLSSV SSNIGHLKKI LLINLKDCTG LRELPRSIYK1200
 1201 LDSLKTLILS GCTKIDKLEE DIEQMKSLTT LVADDTAITR VPFAVVRSKS IAFISLCGYK1260
 1261 GSARRVFPSI IQSWLSPTNN ILSLVQTSAG TLCRDFIDEQ NNSFYCLSSI LEDLQNTQRL1320
 1321 WVKCDSQAQL NQTVASILYS FNTQNCEGFS NIETSASNFR RTQVCISSSK NSVTSLLIEM1380
 1381 GVSCDVANIL RENILQKMPP TGSGLLPGDN YPDWLTFNSN SSSVTFEVPQ VDGRSLKTIM1440
 1441 CIAYSSSLDN TTTVGFKVVL VINCTKNTIH VYKIGALLSS FDEEEWQRVI SNIEPGNEIK1500
 1501 VVVVFTNEFI VKKTTIYLVY DEPIEEKTNH CHEPDENGIV SSGDENIFGR LFFTIPSLAR1560
 1561 AVLISRPFWF CLAGIMVWSS SCRSDKRTRN NPILRDVAST SSQGFNNLES LDKNPLDGVQ1620
 1621 DVKRRG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle