YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92896105
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVCCRGFWEC LLKLLNFILT VTGLAIVGYG IYLLVAFAKA SDDDKPDISP TPDISPVSGD  60
   61 SALIQFGRPM LMAVSLSDNI FDKLPKAWFI YLFIGVGAVL FVVSCFGCIG ATTRNGCCLI 120
  121 CYSILVALLI LVELGCAAFL FFDKSWKEEI PTDKTGDFDM IYGFLRENWD IVRWVALGIV 180
  181 IFEALLFLLA LIVRAVNRPA DYDSDDELIN PRQQVRQPLL NNRQAGPPSG LPVAGTTDQR 240
  241 PNRNDAWSTR MREKYGLDTS EFTYNPSESQ RFQQANSQPT EEKSRCTIM

Type	Start	End	Confidence
Cytoplasmic	1	13	0.88
Transmembrane Helix	14	33	0.94
Non-Cytoplasmic	34	87	0.93
Transmembrane Helix	88	110	0.94
Cytoplasmic	111	118	0.79
Transmembrane Helix	119	141	0.94
Non-Cytoplasmic	142	170	0.94
Transmembrane Helix	171	193	0.91
Cytoplasmic	194	289	0.96