YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92897147
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSQIFVLIV ICFFTYSSSL KIGETCGSCD AGLTCQTCPA NGNTRPRCSR ILSSNPVNKV  60
   61 KGLPFNRYSW LTTHNSFAMA GARSATGSII LAPMNQDDTI ADQLKNGVRG FMLDMYDFQN 120
  121 DVWLCHSTGG KCFNFSSFIP AVNALRDMRS FLDANPSEII TIFIEDYVRA PAALTKVIQA 180
  181 SGINKYMFPV GRLPKNGSDW PTVDDMILNN QRFIAFSSRS SKEAAEGIPF TWKYVVENQY 240
  241 GDEGMQPGSC PNRNESPPMN TKSRSLVLMN FFHSTPNRSQ ACGDNSAPLL SMLKTCHEAA 300
  301 GNRWPNFIAV DYYLRSDGGG VPQAVDAANG RLTCGCDSIA YCKANGTFGS CDVPPISPPP 360
  361 PASEAAPNGN QKSPNNSQAS NAYSGRTAMM MQLVVLTMVA TTFLAWL

Type	Start	End	Confidence
Signal Peptide	1	19	0.95
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	386	0.99
Transmembrane Helix	387	406	0.68
Cytoplasmic	407	407	0.71