YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90265691
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	70	0.99
Transmembrane Helix	71	91	0.92
Non-Cytoplasmic	92	98	0.74
Transmembrane Helix	99	120	0.91
Cytoplasmic	121	137	0.94
Transmembrane Helix	138	161	0.89
Non-Cytoplasmic	162	183	0.96
Transmembrane Helix	184	206	0.91
Cytoplasmic	207	246	0.97
Transmembrane Helix	247	266	0.89
Non-Cytoplasmic	267	300	0.87
Transmembrane Helix	301	322	0.91
Cytoplasmic	323	344	0.85
Transmembrane Helix	345	366	0.65
Non-Cytoplasmic	367	419	0.67
Transmembrane Helix	420	441	0.82
Cytoplasmic	442	445	0.68
Transmembrane Helix	446	469	0.87
Non-Cytoplasmic	470	484	0.67
Transmembrane Helix	485	514	0.79
Cytoplasmic	515	534	0.80
Transmembrane Helix	535	557	0.93
Non-Cytoplasmic	558	590	0.83
Transmembrane Helix	591	613	0.85
Cytoplasmic	614	631	0.68
Transmembrane Helix	632	655	0.83
Non-Cytoplasmic	656	664	0.74
Transmembrane Helix	665	684	0.79
Cytoplasmic	685	716	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASHANASGG GGDEEMVEAS TLRHRHGAGK DANGVGTERQ LAAAAAEGEX EGPRRWSARS  60
   61 GQGVPSWREQ LTVRAFVVSF FLSIMFSIIV MKLNLTTGII PSLNVSAGLL GFFFVRLWTA 120
  121 AIERVGLLRQ PFTRQENTVI QTCVVAAYGI AFSGGFGTYL FGMSETIAKQ ATEANNAQNV 180
  181 KNPHIGWMIG FLFLVSFIGL LALVPLRKIM IVDYKLTYPS GTATAYLING FHTPEGAKLA 240
  241 KKQVKELGKF FLFSFVWGFF QWFYTAGDGC GFQSFPTLGL QAYKNRFYFD FSPTYVGVGM 300
  301 ICPHIVNVSV LLGGILSWGI MWPLIRNKKG SWYAASLSET SLHGLQGYRV FISIALILGN 360
  361 GLYNFVKVLI RKTAGFVVMM KKNSTLPVSN NGSPMVATEA ISFDDERRTE LFLKDQIPKT 420
  421 VAFGGYVAVA AVSIGTLPQI FPQLKWYYIL VAYVFAPVLA FCNAYGAGLT DWSLASTYGK 480
  481 LAIFIFGAWA GASNGGVLVG LAACGVMMSI VSTASDLMQD FKTGYLTLAS PRSMFVSQVI 540
  541 GTAMGCVIAP CVFWLFYKAF ADIGVSGTEY PAPYAIVYRN MAILGVDGFS SLPKHCLTLC 600
  601 YIFFAAAIAI NLARDLAPSK VARFIPLPMA MAIPFYIGSY FAIDMFIGTV ILFVWEMVNK 660
  661 AKAEAFAPAV ASGLICGDGI WTLPQSILAL AKVKPPICMK FLSRSVNAQV DGFLGN