YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92019685
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.87
Transmembrane Helix	20	39	0.79
Non-Cytoplasmic	40	59	0.81
Transmembrane Helix	60	82	0.83
Cytoplasmic	83	151	0.96
Transmembrane Helix	152	172	0.95
Non-Cytoplasmic	173	191	0.86
Transmembrane Helix	192	211	0.95
Cytoplasmic	212	218	0.88
Transmembrane Helix	219	243	0.87
Non-Cytoplasmic	244	268	0.93
Transmembrane Helix	269	288	0.88
Cytoplasmic	289	297	0.65
Transmembrane Helix	298	321	0.82
Non-Cytoplasmic	322	340	0.89
Transmembrane Helix	341	367	0.82
Cytoplasmic	368	391	0.87
Transmembrane Helix	392	412	0.89
Non-Cytoplasmic	413	420	0.73
Transmembrane Helix	421	443	0.91
Cytoplasmic	444	449	0.80
Transmembrane Helix	450	470	0.94
Non-Cytoplasmic	471	477	0.78
Transmembrane Helix	478	497	0.94
Cytoplasmic	498	514	0.90
Transmembrane Helix	515	536	0.81
Non-Cytoplasmic	537	554	0.65
Transmembrane Helix	555	573	0.37
Cytoplasmic	574	787	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEIGGAAR QVQWKSYCKT LSLLAFQSFG VVYGDLSTSP LYVYRSSFSG RLNSYRDETT  60
   61 IFGLFSLIFW TLTLVPLLKY VIIVLSADDN GEGGTFALYS LLCRHAKFSL LPNQQTADEE 120
  121 LSTYYYYQPG TGRTAVSSPF KRFLEKHRKL RTCLLLFVLF GACMVIGDGI LTPTMSVLSA 180
  181 ISGLQDPATG GLADGWILLI ACVVLVGLFA LQHRGTHRVA FMFAPIVVLW LLSIGIIGLY 240
  241 NIIHWNPRIC LALSPHYIVK FFKTTGRDGW MALGGVLLAT TGTEAMFADL GHFTAASIRL 300
  301 AFVGAIYPSL VLQYMGQAAF LSRNMSAVHD SFYLSIPRPV FWPVFVIATL AAIVGSQAII 360
  361 SATFSIVKQC LALGCFPRVK VVHTSRWIHG QIYIPEINWI LMVLCLAVTL GFRDITVIGN 420
  421 AYGLACITVM FVTTWLMSLV IIFVWQKNLL IALLFLAFFG SIEGIYLSAA VIKVPQGGWT 480
  481 PIALALVFMF IMYVWHYGTR RKYMFDLQNK VSMKWILTLG PSLGIMRVPG IGLIYTELVT 540
  541 GVPAIFSHFV TNLPAFHQVL VFVCVKSVPV PYVPTDERYL IGRIGPREYR MYRCIVRYGY 600
  601 KDVQKDDENF ENHLVMSIAK FIQMEAEEAA SSGSYESSTE GRMAVVHTTD TTGTGLVVRD 660
  661 SIDAAGTSLS LTRSSKSETL WSLQSIYEQE SGGGLSRRRR VQFQISEEER ADPQVRDELS 720
  721 DLLEAKEAGV AYIIGHSYVK ARKNSNFLKT FAIDYAYSFL RKNCRGPSVT LHIPHISLIE 780
  781 VGMIYYV