YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169779231
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	185	0.99
Transmembrane Helix	186	205	0.97
Cytoplasmic	206	214	0.85
Transmembrane Helix	215	236	0.89
Non-Cytoplasmic	237	260	0.82
Transmembrane Helix	261	281	0.88
Cytoplasmic	282	289	0.89
Transmembrane Helix	290	311	0.92
Non-Cytoplasmic	312	320	0.74
Transmembrane Helix	321	341	0.94
Cytoplasmic	342	365	0.88
Transmembrane Helix	366	388	0.93
Non-Cytoplasmic	389	406	0.93
Transmembrane Helix	407	427	0.91
Cytoplasmic	428	534	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGWLQTFCL TALLAGRALA NEVELTQDEA HRQRCSGMYS RKAWGGDVDP FILTKFVRDG  60
   61 DAGDSDPLVS LVIFEWSDEA LIGRTVSDDA DEKETICDEK SVNDKLCEPG DIGSFILAPN 120
  121 ASESEFTIVT QAVHLNNPAA INYPVKKTGF YCVSTYGYSG RDYKAVVEFR NAYGELPAAQ 180
  181 IAKLPFYGGL TIVYALIGVF WAFLYVQNRH DILPVQNYIT AILVFLIVEQ LMTWGFYDYQ 240
  241 NRHGLNVGAK VLMVIVAVLN AGRNAFSFFL LLIVCMGYGV VKPSLGRAMI YVRILAIGHF 300
  301 IFAVIYAVAS LSITPDSAGP LVLLIVLPLA GTLTAFYVWT LNSLNATMKD LIDRKQKVKA 360
  361 LMYKKLWWCI LGSIIVIFGF FFINSIAFAG RSEASFVPEH WKSRWFVLDG WLNLVYLFDI 420
  421 GFVAYLWRPT ANNRRFAMSD EIAQDDDGFE IRSFNSELDE EDALGGIPES SAHEQRRDLS 480
  481 PVPPKPVPAA PRQRESLDGE TIFAVGEDGD KWSDDEDDLS RDSGERKRLT GKDA