YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169784241
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGIPPWRV SASATATAQT YPTHATPAYI PVQARRSLAH TAVASPTPTP ASQPSDAEAA  60
   61 RKRVEWPAPV RLYVQRSFAP EHQMSSVSRE EMESKLKAVI TEAAENNKLD KIDWASLPLP 120
  121 QVMVQNERNR ILASPNVPAW SAVATQKYES SSDASSRKRK SVEYNGDANS CPPWRQTNNH 180
  181 NAFEDRITYS PTDKRQRIDH KNTSKSKANL ELRRKRFEEP RARYGSSPSS RDDSPSPSAN 240
  241 QGPVVGRCQD LEKNYFRLTS APNPDTVRPL PVLVKTLDLL KKKWKRDNNY NYICDQFKSL 300
  301 RQDLTVQHIR NEFTVSVYEI HARIALEKGD LGEYNQCQTQ LRALYAQQLG GHPTEFKAYR 360
  361 ILYFIHTRNW TAMNDALADL TAADKRDPAV KHALDVRSAL ALGNYHRFFQ LYLDTPNMGA 420
  421 YLMDMFVDRE RLSALTAICK AYKPDVNIRF ITEELGFESD EQSAHFILDH TSEDLLQEKD 480
  481 GAVRLLTGAK AAQLFEAAKA DAHRIVDIKG QI

Type	Start	End	Confidence
Signal Peptide	1	25	0.84
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	512	0.99