YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NCASE_ORYSJ
Protein type: Globular with Signal Peptide
Type Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEASSWLCYQ ARGFGSSRVW LWLLLALVLL NCSLVLSASP YLVGMGSFDI TGPAADVNMM  60
   61 GYANTEQIAS GIHFRLKSRA FIVAEPNGKR VVFVNIDACM ASQIVTIKVL ERLKARYGDL 120
  121 YNENNVAISG IHTHAGPGGY LQYVVYIVTS LGFVRQSFDV IVDGIEQSIV EAHNNLRPGK 180
  181 IFVNKGDLLD AGVNRSPSAY LNNPAEERSK YEYNVDKEMT LIKFVDDELG PVGSFNWFAT 240
  241 HGTSMSRTNS LISGDNKGAA ARFMEDWAEQ MGLPKQSAHA NSDDLRSLHK TSVLPRRVST 300
  301 IIPEPNEITD DLIQLASSYE ASGGRRLAGS SITRRIRSTQ QNKPKFVSAF CQSNCGDVSP 360
  361 NVLGTFCIDT NLPCDFNHST CNGKNELCYG RGPGYPDEFE STRVIGNRQF LKARDLFDSA 420
  421 SEEIQGKIDY RHTYLDFSKL EVKVSTSAGG QQTVKTCPAA MGFAFAAGTT DGPGAFDFRQ 480
  481 GDVKGNPFWK LVRNLLKTPG KDQVECHSPK PILLDTGEMK EPYDWAPAIL PVQMIRIGQL 540
  541 VILCVPGEFT TMAGRRLRDA VKTVLTSGNS EFDKNIHVVL AGLTNSYSQY ITTFEEYQIQ 600
  601 RYEGASTLYG PHTLSAYIQE FQKLAMAMIA NKEVPTNFQP PDMLDKQIGL LPGVVFDSTP 660
  661 LGVKFGDVNS DVPGNSTFNK GSTVNATFYS ACPRNDLLTD GTFALVEKLD GNNNWVPVYD 720
  721 DDDWSLRFKW SRPARLSSRS FATLEWTVPE DAAAGVYRLR HFGASKPMFG SVRHFTGTSR 780
  781 AFAVR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle