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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115460558, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWRMAVSRL LHGCVLVLLL AAAVVQAQRA ATRTDPTEAA ALNAVFAKLG QQAQSSWNLS  60
   61 GDPCTGRATD GSAIDDTSFN PAITCDCTFQ NSTICRITKL KIHAVDASGP IPEELRNLTR 120
  121 LTDLNLGQNL LSGPLPSFIG ELTNMQKMTF GINSLSGPIP KELGNLTNLI SLGLGSNHFN 180
  181 GSLPTELGNL IKLQELYIDS AGLSGPLPSS LSKLTRMQIL WASDNNFTGQ IPDYIGSWNL 240
  241 TDLRFQGNSF QGPIPAALSN LVQLSSLILR NCRISDNLAS LDFSKFASLS LLDFSYNQLS 300
  301 GNFPPWASDK NLQFILPSGL ACLQRNTSFF LGSPQSSSFA VNCGSNRFIS GSDNLRYETD 360
  361 DVNLQAASYN VTGAPTWGVS NVGKFMDAPN GNYIIYSSRQ FQHTLDSELF LTSRMSPSSL 420
  421 RYYGIGLENG NYTVTLQFAE FGIEDTQSWK SLGRRVFDIY VQGERKEKNF DIRKTAGDKS 480
  481 YTVVKKQYKV PVTKNFLEIH LFWAGKGTCC IPTQGYYGPT ISALSVIPAG SIFAYLCKIP 540
  541 FSLFNLTSGL CSDFTPTVGN TAHKNKSTSK TGVIVGVVVG VTVLGLVALV GIFMWRQKRR 600
  601 KLSLEQQELY SIVGRPNVFS YSELRSATEN FSSSNRLGEG GYGTVYKGKL TDGRVVAVKQ 660
  661 LSQTSHQGKK QFATEIETIS RVQHRNLVKL YGCCLEGNNP LLVYEYMENG SLDKALFGTE 720
  721 KLTIDWPARF EICLGIARGL AYLHEESSIC VVHRDIKASN VLIDANLNPK ISDFGLAKLY 780
  781 DDKKTHVSTK VAGTFGYLAP EYAMRGHMTE KVDVFAFGVV LLETLAGRPN YDDTLEEDKI 840
  841 YIFEWAWELY ENNNPLGLVD PKLKEFNREE VLRAIRVALL CTQWSPHQRA PMSRVVSMLA 900
  901 GDVEVPDVLT KPSYITEWQI KGGNTSFANS GVSGQSSSAP GSASEQQGSS LFLNSVIPEG 960
  961 R

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle