YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115451677, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETGREERERE RESGGERRLA GSSSTAPHSR PGGREGERKE RGDSMEAKGE NDARAPLLAE  60
   61 RRRNSVGSMR GEFVSRLPKK VLDAVDPERP SHVDFSRSKG LREGEKEYYE KQFATLRSFE 120
  121 EVDSIEESNV MSEEDDIAEQ KQSEFAMKIS NYANMILLAL KIYATIKSGS IAIAASTLDS 180
  181 LLDLMAGGIL WFTHLSMKSI NVYKYPIGKL RVQPVGIIIF AAVMATLGFQ VFVQAVEKLI 240
  241 VNETPDKLTP VQLTWLYSIM IFATVVKLAL WLYCRTSGNK IVRAYAKDHY FDVVTNVVGL 300
  301 AAAVLGDMFY WWIDPVGAIA LAVYTITNWS GTVWENAVSL VGESAPPEML QKLTYLAIRH 360
  361 HPQIKRVDTV RAYTFGVLYF VEVDIELPEE LPLKEAHAIG ESLQIKIEEL PEVERAFVHL 420
  421 DFECDHKPEH NILSKLPSSQ P

Type	Start	End	Confidence
Cytoplasmic	1	149	0.83
Transmembrane Helix	150	166	0.63
Non-Cytoplasmic	167	170	0.52
Transmembrane Helix	171	195	0.76
Cytoplasmic	196	213	0.75
Transmembrane Helix	214	233	0.94
Non-Cytoplasmic	234	252	0.87
Transmembrane Helix	253	274	0.91
Cytoplasmic	275	289	0.89
Transmembrane Helix	290	311	0.77
Non-Cytoplasmic	312	317	0.54
Transmembrane Helix	318	334	0.64
Cytoplasmic	335	441	0.75