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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|125606604, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAALRLAV LAVAIGALVA SSSAAVCPHA NHTAPFAADF TMLQHQLRGT VRLADDDSCA  60
   61 LRLTRFDLLA ASPSARFWAA RGDSLADLAA GRAFSPHPLN STFRNATLLL PFSAPLPPLL 120
  121 ALFDPDTSSD LGHVFLPVSA SASASNATDD SGVASPSPSP EPVPTMFDNC LPLAENKYRL 180
  181 RWTLNASAGT VEIGLEAAVG SEYYMAFGWA DPKANSPAMI HSDVAVAGFT EEGMPFAEDY 240
  241 YITDYSECTL GTDESPVSGV CPDKVYDEGK NDSLLVYGHR RDGVSFVRYQ RKLDTGDTKY 300
  301 DVLVSATEEM AVVWAIGKLR PPDTLRPHYL PQNHGGPRDT TYGFARVNLS ETVDSCNGPL 360
  361 DADNKEDQER IIADAKTPLV VTSAPAVRYP NPPNPDKVIY INKKEAPLLK VERGVPVKFS 420
  421 VQAGHDVALY ITSDPIGGNA TLRNKTEVIY AGSRDAHGVP ATPTELLWLP DRNTPDLVYY 480
  481 QSLYEPKMGW KVQVVDGGLS DMYNSSVLLD DQQVTLFWTL SHDSISIAAR GEKKSGYLAV 540
  541 GFGSGMLNSY AYVGWVGNDG VGRVKSYWID GKSAAGIHPT SENLTYVRCR SENGIITFEF 600
  601 TRPLRPSCSG RVECKNIIDP TTPLKVVWAM GASWSGNSLT DSNMHSITSS RPIRVLLLRG 660
  661 SAEAEQDLRP VLAVHGFMMF VAWGILLPGG ILAARYLKNL KGDGWYQIHV YLQYSGIAIM 720
  721 FLGVLFAAAE LRGFYVSSVH VKFGVTALLL AGLQPLNAYF RPKRPANGEA SSWNRVLWEY 780
  781 LHVITGRSAI IVGIVALFTG MKHLGHRYDS ENVEELTWAL MLWVLSAIVI TLYLEYKEVK 840
  841 RRSGDTSSRG HWVLGNTEED DSVDLLHPDS TDRNSESSPS GVMEVQLEPL AR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle