YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94384289
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGRTVEVLV NTACCVLMLV AKLIQCIVFG PLRVSERQHL KDKFWNFIFY KFIFIFGVLN  60
   61 VQTVEEVVMW CLWFAGLVFL HLMVQLCKDR FEYLSFSPTT PMSSHGRVLS LLIAMLLSCC 120
  121 GLAVVCCVTG YTHGMHTLAF MAAESLLVTV RTAHVILRYV IHLWDLNHEG TWEGKGTYVY 180
  181 YTDFVMELAL LSLDLMHHIH MLLFGNIWLS MASLVIFMQL RYLFHEVQRR IRRHKNYLRV 240
  241 VGNMEARFAV ATPEELAVNN DDCAICWDSM QAARKLPCGH LFHNSCLRSW LEQDTSCPTC 300
  301 RMSLNIADGS RAREDHQGEN LDENLVPVAA AEGRPRLNQH NHFFHFDGSR IASWLPSFSV 360
  361 EVMHTTNILG ITQASNSQLN AMAHQIQEMF PQVPYHLVLQ DLQMTRSVEI TTDNILEGRI 420
  421 QVPFPTQRSD SLRPALNSPV ERPSPDLEEG EASVQTERVP LDLSPRLEET LDFSEVELEP 480
  481 IEVEDFEARG SRFSKSADER QRMLVQRKDD LLQQARKRFL NKSSEDDGAS ERLLPSEGTS 540
  541 SDPVTLRRRM LAAAAERRLQ RQRTT

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.69
Transmembrane Helix	8	29	0.74
Cytoplasmic	30	43	0.80
Transmembrane Helix	44	63	0.82
Non-Cytoplasmic	64	68	0.70
Transmembrane Helix	69	87	0.89
Cytoplasmic	88	107	0.85
Transmembrane Helix	108	132	0.91
Non-Cytoplasmic	133	201	0.50
Transmembrane Helix	202	224	0.89
Cytoplasmic	225	565	0.73