YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94399989
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGPQGLPLR TPPRARCLEA PPHAASRIAE RRAGWHCTPD PTPPLLPGWT GERPTIAEPP  60
   61 PPRADKELRG AVLRDSHHSD PSVGETDRVK MLRSREPKEE KRGRLPAGPG RRPPATEWAP 120
  121 HVAQSPADRR PPLPAPPRRP PRDAAAATGP PRPPCKKEVC SVAFFKAVFA EFLATLIFVF 180
  181 FGLGSALKWP SALPTILQIS IAFGLAIGTL AQALGPVSGG HINPAITLAL LIGNQISLLR 240
  241 AIFYVAAQLV GAIAGAGILY WLAPGNARGN LAVNALSNNT TPGKAVVVEL ILTFQLALCI 300
  301 FSSTDSRRTS PVGSPALSIG LSVTLGHLVG IYFTGCSMNP ARSFGPAVVM NRFSPSHWVF 360
  361 WVGPIVGAVL AAILYFYLLF PSSLSLHDRV AVVKGTYEPE EDWEDHREER KKTIELTAH

Type	Start	End	Confidence
Cytoplasmic	1	161	0.92
Transmembrane Helix	162	184	0.86
Non-Cytoplasmic	185	198	0.64
Transmembrane Helix	199	222	0.79
Cytoplasmic	223	240	0.71
Transmembrane Helix	241	263	0.92
Non-Cytoplasmic	264	284	0.83
Transmembrane Helix	285	304	0.83
Cytoplasmic	305	313	0.75
Transmembrane Helix	314	336	0.87
Non-Cytoplasmic	337	356	0.83
Transmembrane Helix	357	379	0.93
Cytoplasmic	380	419	0.86