YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90962183, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.75
Transmembrane Helix	6	27	0.91
Cytoplasmic	28	42	0.80
Transmembrane Helix	43	65	0.87
Non-Cytoplasmic	66	72	0.74
Transmembrane Helix	73	94	0.84
Cytoplasmic	95	101	0.83
Transmembrane Helix	102	121	0.90
Non-Cytoplasmic	122	126	0.68
Transmembrane Helix	127	148	0.87
Cytoplasmic	149	159	0.63
Transmembrane Helix	160	180	0.88
Non-Cytoplasmic	181	185	0.77
Transmembrane Helix	186	205	0.93
Cytoplasmic	206	211	0.80
Transmembrane Helix	212	233	0.89
Non-Cytoplasmic	234	238	0.81
Transmembrane Helix	239	261	0.91
Cytoplasmic	262	290	0.94
Transmembrane Helix	291	312	0.89
Non-Cytoplasmic	313	318	0.73
Transmembrane Helix	319	340	0.90
Cytoplasmic	341	363	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRIIASLFA TMILSAILTP FIRLLAFKVG AVDNPNARRV NKVPMPTMGG LAIFLAFNVT  60
   61 NFLLLRKQYP IEQLWALLLA ECIILATGII DDIYELKPRQ KIYGITLAAL VVFFIAKIKM 120
  121 TTITLPFLGT VTLGWLSLPI TLIWILAITN AVNLIDGLDG LATGVAIIAL STSAVTGYFF 180
  181 LNVTNTFISI MMFTLVAALI GFLPYNFHPA KIYLGDTGSL FIGFMISVFA LYGLKNATFI 240
  241 TIIIPVIILG VPITDTVYAI LRRILNKKPI SQADKHHLHH RLMQMGLSHR QTVLVIYGIA 300
  301 LIFSSISLLY PISSFWGSVL LTVATLLGLE IFVEVIGLVG ESRRPLLNFI KKIVLLSENK 360
  361 IEK