YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157118919, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIPNQYLEK TEDVADQVIR KGKHVLPHVA RLCLIATFLE DGIRMWVQWN EQREYMDMSW  60
   61 GCGKFLATVF VLINLVGQIG GCVMVLGRLK VTIACGILFF IVVLQTIAYS ILWDIQFLLR 120
  121 NLALIGALLL VLAESRGEAR SLFAGVPSLG ENKPKNFMQL AGRILLAFMF ITLIRFELSF 180
  181 LQVLQDIVGS ILMVLVVIGY KTKLSALILV ALLTVLNLYH NAWWSIPAYK PLRDFLKYDF 240
  241 FQTLSVIGGL LMIVSLGPGG VSMDEHKKKW

Type	Start	End	Confidence
Cytoplasmic	1	27	0.78
Transmembrane Helix	28	47	0.58
Non-Cytoplasmic	48	64	0.69
Transmembrane Helix	65	85	0.86
Cytoplasmic	86	90	0.63
Transmembrane Helix	91	112	0.88
Non-Cytoplasmic	113	116	0.69
Transmembrane Helix	117	135	0.83
Cytoplasmic	136	156	0.74
Transmembrane Helix	157	176	0.82
Non-Cytoplasmic	177	180	0.57
Transmembrane Helix	181	200	0.70
Cytoplasmic	201	204	0.61
Transmembrane Helix	205	224	0.88
Non-Cytoplasmic	225	239	0.72
Transmembrane Helix	240	262	0.89
Cytoplasmic	263	270	0.74