YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94541299, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METILQTKLP VAQLVEQLTE WLTKTFSGLF DIMQVVGSFL MDWMTKTLLF IHPLLFIVLV  60
   61 TAGMFFLAKK KWPLPTFTLL GLLFIYNQGL WKQLMNTFTL VLVASLISVL IGIPLGIWMA 120
  121 KNATVRQIVN PILDFMQTMP AFVYLIPAVA FFGIGMVPGV FASVIFALPP TVRFTNLAIR 180
  181 DIPTELIEAS DAFGSTGKQK LFKVELPLAK NTIMAGVNQT MMLALSMVVT GSMIGAPGLG 240
  241 REVLSALQHA DIGSGFVSGL ALVILAIVLD RMTQLFNSKP QEKAKAGKTN KWIGLAALAA 300
  301 LAVFLIAALG RGIMTMASGM ADKGETVNIA YVQWDSEVAS THVIAEVLKN EGYHVTLTPL 360
  361 DNAVMWQTVA NGNADFSTSA WLPVTHGQQY QKYKSKLDDL GPNLKGTKLG LAVPKYMTDV 420
  421 NSIEDLSKQA DQKITGIEPG AGIMAAAKKT LKEYHNLSSW ELVAASTGAM TTSLDQAIKK 480
  481 KDPIVVTAWS PHWMFAKYDL KYLKDPKETF GSTENINTIA RKGLKKDLPN VYKIIDKFHW 540
  541 TQKDMEAVML DINKGMSPEA AAKKWVEANK SKVSSWTK

Type	Start	End	Confidence
Cytoplasmic	1	47	0.59
Transmembrane Helix	48	68	0.93
Non-Cytoplasmic	69	71	0.45
Transmembrane Helix	72	91	0.61
Cytoplasmic	92	97	0.58
Transmembrane Helix	98	120	0.90
Non-Cytoplasmic	121	140	0.71
Transmembrane Helix	141	168	0.84
Cytoplasmic	169	216	0.75
Transmembrane Helix	217	239	0.83
Non-Cytoplasmic	240	248	0.69
Transmembrane Helix	249	269	0.91
Cytoplasmic	270	291	0.70
Transmembrane Helix	292	310	0.96
Non-Cytoplasmic	311	578	0.78