YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94552360, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTALRNLKLI AAALVLIVLV GMVGFHFIEG WPWFDGFYMT ITTLTTIGYM ETHPLSHAGR  60
   61 VFNSVLMLVG VGTVFLAIGS LTQALLEFEL QSVFGRKRME REISRLTGHY IICGAGRVGR 120
  121 SVAREFGRKP APFVIVENKR EKIDRYASEG WLSLEGDATQ ERTLEEAGIA RAKGLVAATT 180
  181 ADATNIYIVL TARAMNPNLK IIARASEDSA EKHLRTAGAD NVISPYLFAG SRIAQTLMRP 240
  241 GVMNFFDAAH GHLGMDLEMD EIPVTSGSRL AGKTIATSGI RQETGVIVLA IHRKDGMRFN 300
  301 PTSDDVIQAG DSLIAMGDPE KLRILEQAAA AK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.87
Transmembrane Helix	9	28	0.96
Non-Cytoplasmic	29	35	0.77
Transmembrane Helix	36	53	0.78
Cytoplasmic	54	61	0.67
Transmembrane Helix	62	86	0.85
Non-Cytoplasmic	87	332	0.87