YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|95112706, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.50
Transmembrane Helix	7	34	0.77
Cytoplasmic	35	55	0.46
Transmembrane Helix	56	76	0.55
Non-Cytoplasmic	77	81	0.54
Transmembrane Helix	82	101	0.90
Cytoplasmic	102	117	0.92
Transmembrane Helix	118	138	0.94
Non-Cytoplasmic	139	157	0.88
Transmembrane Helix	158	180	0.93
Cytoplasmic	181	197	0.88
Transmembrane Helix	198	216	0.96
Non-Cytoplasmic	217	229	0.78
Transmembrane Helix	230	248	0.95
Cytoplasmic	249	259	0.74
Transmembrane Helix	260	280	0.94
Non-Cytoplasmic	281	299	0.89
Transmembrane Helix	300	320	0.94
Cytoplasmic	321	335	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIDLPLIWA VIIIFGVMMY VVMDGFDLGI GMLFPFVQDE RDRDVMMNTV APVWDGNETW  60
   61 LVLGGAALFG AFPLAYSVVL EALYLPLILM LVGLIFRGVA FEFRFKARAN KRHIWDKAFI 120
  121 WGSLVATFFQ GVALGAFIEG FKVVDRKFAG GTLDWLTPFT LFCGLGLIVA YTLLGCTWLI 180
  181 MKTEGPLQQK MHDMARPLAL VLLAVIGIVS LWTPIAYPQI AERWFSMPNL VWFMPVPILV 240
  241 LVTFYGLLRA VARNAHYTPF LLTLVLIFLG YSGLGISLWP NIIPPSISIW DAAAPPQSQG 300
  301 FMLVGTLFIL PFILGYTYWS YYVFRGKVTH EDGYH