YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|104783720, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.86
Transmembrane Helix	20	42	0.87
Cytoplasmic	43	55	0.91
Transmembrane Helix	56	79	0.87
Non-Cytoplasmic	80	96	0.91
Transmembrane Helix	97	120	0.88
Cytoplasmic	121	126	0.88
Transmembrane Helix	127	148	0.94
Non-Cytoplasmic	149	185	0.94
Transmembrane Helix	186	208	0.91
Cytoplasmic	209	218	0.89
Transmembrane Helix	219	238	0.91
Non-Cytoplasmic	239	322	0.97
Transmembrane Helix	323	346	0.90
Cytoplasmic	347	357	0.95
Transmembrane Helix	358	379	0.94
Non-Cytoplasmic	380	406	0.92
Transmembrane Helix	407	428	0.92
Cytoplasmic	429	478	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGLEALELA RIQFAFTVSF HILFPAITIG LASYLAVLEG LWLKTGDNTY RDLYHFWSKI  60
   61 FAVNFGMGVV SGLVMAYQFG TNWSQFSDFA GSITGPLLTY EVLTAFFLEA GFLGVMLFGW 120
  121 NRVGRGLHFF ATCMVALGTL VSTFWILASN SWMQTPQGYE IVNGQVIPVD WFAVIFNPSF 180
  181 PYRLMHMATA AFVATAFFVG SSAAWHLLRG RDNPAVRKML SMAMWMALIV APVQAVIGDF 240
  241 HGLNTLKHQP VKIAAIEGHW ENKPGEPTPL ILFGIPDMKA ETTRFKIEIP ALGSLILTHS 300
  301 LDKQVPAMKE FPPEDRPNST IVFWSFRIMV GLGMLMIVVG LWSLWLRKRG TLYSSRPFLY 360
  361 LTLWMGPSGL IAILAGWFTT EVGRQPWVVY GLMRTADGVS NHSYAQLGFT LVMFVVVYFA 420
  421 LFGTGIGYMM RLVRKGPKTG EGEEHTPGGP GQQRTPARPL SAADEGHEAD STSLSKGN